Gm534 Gene Detail

Summary

• Symbol
  Gm534
• Name
  predicted gene 534
• Synonyms
  LOC218993

• Feature Type
  lncRNA gene
• IDs
  MGI:2685380
  NCBI Gene: 102639645
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:49106736-49119339 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 25.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  423 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685380	lncRNA gene	Chr14:49106728-49123184 (-)
129S1/SvImJ	ENSMUSG00200017180	lncRNA gene	Chr14:37945801-37958152 (-)
A/J	ENSMUSG00195026056	lncRNA gene	Chr14:38152267-38164617 (-)
AKR/J	ENSMUSG00220042084	lncRNA gene	Chr14:37526800-37539149 (-)
BALB/cJ	ENSMUSG00180044708	lncRNA gene	Chr14:37759880-37772231 (-)
C3H/HeJ	ENSMUSG00175030841	lncRNA gene	Chr14:39440602-39452951 (-)
C57BL/6NJ	ENSMUSG00215036682	lncRNA gene	Chr14:38129309-38141653 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010929	lncRNA gene	Chr14:39933381-39945729 (-)
CBA/J	ENSMUSG00210044927	lncRNA gene	Chr14:38085509-38097859 (-)
DBA/2J	ENSMUSG00185056112	lncRNA gene	Chr14:42859620-42871970 (-)
FVB/NJ	ENSMUSG00205048329	lncRNA gene	Chr14:37291268-37303615 (-)
JF1/MsJ	ENSUMUG00000048573	lncRNA gene	Chr14:54904815-54917165 (-)
LP/J	ENSMUSG00230053292	lncRNA gene	Chr14:55113735-55126078 (-)
NOD/ShiLtJ	ENSMUSG00190042282	lncRNA gene	Chr14:37763717-37776063 (-)
NZO/HlLtJ	ENSMUSG00225052152	lncRNA gene	Chr14:45382835-45395193 (-)
PWK/PhJ	ENSLUMG00010041460	lncRNA gene	Chr14:37358006-37370355 (-)
SPRET/EiJ	ENSMSPG00010003718	lncRNA gene	Chr14:40703837-40716460 (-)
WSB/EiJ	ENSIUOG00005040289	lncRNA gene	Chr14:37653957-37666674 (-)

Homology

• Gene Tree
  Gm534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm534
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000115398 (Evidence)
• NCBI Gene
  102639645

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115398	Ensembl Gene Model | MGI Sequence Detail	12604	C57BL/6J
transcript	ENSMUST00000264243	Ensembl | MGI Sequence Detail	2772	Not Applicable
polypeptide	Q8BPW3	UniProt | EBI | MGI Sequence Detail	108	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:94790 Mouse Genome Informatics Scientific Curators, Mouse Synonym Curation. 2005;

TSS for Gm534:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128347	Chr14:49119301-49119312 (-)	32 bp