About   Help   FAQ
Lypd9 Gene Detail
Summary
  • Symbol
    Lypd9
  • Name
    LY6/PLAUR domain containing 9
  • Synonyms
    4930504O13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685370
    NCBI Gene: 403200
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58336975-58343749 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 36.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    374 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685370
 protein coding gene Chr11:58336969-58343792 (-)
129S1/SvImJ ENSMUSG00200033784
 protein coding gene Chr11:55346910-55353680 (-)
A/J ENSMUSG00195033921
 protein coding gene Chr11:55277386-55284146 (-)
AKR/J ENSMUSG00220039630
 protein coding gene Chr11:55443096-55449866 (-)
BALB/cJ ENSMUSG00180041312
 protein coding gene Chr11:55363107-55369881 (-)
C3H/HeJ ENSMUSG00175047117
 protein coding gene Chr11:55312680-55319440 (-)
C57BL/6NJ ENSMUSG00215022146
 protein coding gene Chr11:55127774-55134548 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016396
 protein coding gene Chr11:53284843-53292402 (-)
CAST/EiJ ENSTCUG00005040809
 protein coding gene Chr11:54849182-54855952 (-)
CBA/J ENSMUSG00210032949
 protein coding gene Chr11:55164039-55170799 (-)
DBA/2J ENSMUSG00185032631
 protein coding gene Chr11:55348967-55355727 (-)
FVB/NJ ENSMUSG00205030879
 protein coding gene Chr11:55216777-55223539 (-)
JF1/MsJ ENSUMUG00000033311
 protein coding gene Chr11:55690657-55697431 (-)
LP/J ENSMUSG00230048188
 protein coding gene Chr11:56553485-56560245 (-)
NOD/ShiLtJ ENSMUSG00190039793
 protein coding gene Chr11:55406716-55413477 (-)
NZO/HlLtJ ENSMUSG00225031002
 protein coding gene Chr11:58569186-58575954 (-)
PWK/PhJ ENSLUMG00010028014
 protein coding gene Chr11:55153606-55160347 (-)
SPRET/EiJ ENSMSPG00010028537
 protein coding gene Chr11:55944944-55952502 (-)
WSB/EiJ ENSIUOG00005033453
 protein coding gene Chr11:55209080-55215856 (-)



Homology
more
  • Human Ortholog
    LYPD9P, LY6/PLAUR domain containing 9, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYPD9P, LY6/PLAUR domain containing 9, pseudogene
  • Links
    NCBI Gene ID: 101928226

  • Chr Location
    chr1:248692152-248699110 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from multigenic genotypes
    6 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    3
  • Targeted
    2
  • Genomic Mutations
    1 involving Lypd9
  • Find Mice (IMSR)
    11 strains or lines available
Males homozygous for a null allele exhibit normal fertility, and show normal testes and normal sperm counts, motility and morphology.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    646
  • Tissues
    4
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052642 Ensembl Gene Model | MGI Sequence Detail 6775 C57BL/6J ±  kb
transcript ENSMUST00000064614 Ensembl | MGI Sequence Detail 549 Not Applicable  
polypeptide ENSMUSP00000063665 Ensembl | MGI Sequence Detail 145 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
    IPR045860 Snake toxin-like superfamily
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
Other
Accession IDs
less
MGI:6202888
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:301628 Feng J, et al., Testis-specific Lypd9 is dispensable for spermatogenesis in mouse. Mol Reprod Dev. 2018 Feb;85(2):87-89
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory