Gm378 Pseudogene Detail

Summary

• Symbol
  Gm378
• Name
  predicted pseudogene 378
• Synonyms
  LOC213454

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:2685224
  NCBI Gene: 213454
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:107449400-107450153 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685224	pseudogene	ChrX:107449294-107450374 (+)
129S1/SvImJ	ENSMUSG00200039243	pseudogene	ChrX:89247799-89248879 (+)
A/J	ENSMUSG00195041000	pseudogene	ChrX:92963574-92964654 (+)
AKR/J	ENSMUSG00220039718	pseudogene	ChrX:87702035-87703115 (+)
BALB/cJ	ENSMUSG00180044663	pseudogene	ChrX:89629572-89630652 (+)
C3H/HeJ	ENSMUSG00175047284	pseudogene	ChrX:93205384-93206464 (+)
C57BL/6NJ	ENSMUSG00215047592	pseudogene	ChrX:89858798-89859878 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043031	pseudogene	ChrX:90664730-90665810 (+)
CBA/J	ENSMUSG00210045782	pseudogene	ChrX:90104242-90105322 (+)
DBA/2J	ENSMUSG00185030037	pseudogene	ChrX:102585435-102586515 (+)
FVB/NJ	ENSMUSG00205041049	pseudogene	ChrX:89210568-89211648 (+)
JF1/MsJ	ENSUMUG00000017190	pseudogene	ChrX:123172938-123174018 (+)
LP/J	ENSMUSG00230043488	pseudogene	ChrX:109231230-109232310 (+)
NOD/ShiLtJ	ENSMUSG00190041246	pseudogene	ChrX:89309541-89310621 (+)
NZO/HlLtJ	ENSMUSG00225040577	pseudogene	ChrX:114375387-114376467 (+)
PWK/PhJ	ENSLUMG00010040142	pseudogene	ChrX:88434529-88435609 (+)
SPRET/EiJ	ENSMSPG00010041373	pseudogene	ChrX:92760816-92761915 (+)
WSB/EiJ	ENSIUOG00005044419	pseudogene	ChrX:89829078-89830158 (+)

Homology

• Gene Tree
  Gm378
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000082354 (Evidence)
• NCBI Gene
  213454

Representative Sequences			Length	Strain/Species
genomic	213454	NCBI Gene Model | MGI Sequence Detail	754	C57BL/6J
transcript	XM_036162135	RefSeq | MGI Sequence Detail	754	C57BL/6J
polypeptide	XP_036018028	RefSeq | MGI Sequence Detail	230	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582