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Ccdc9b Gene Detail
Summary
  • Symbol
    Ccdc9b
  • Name
    coiled-coil domain containing 9B
  • Synonyms
    A430105I19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685199
    NCBI Gene: 214239
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:118584639-118593142 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 59.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    194 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685199
 protein coding gene Chr2:118584626-118593421 (-)
129S1/SvImJ ENSMUSG00200045149
 protein coding gene Chr2:115529906-115538403 (-)
A/J ENSMUSG00195022337
 protein coding gene Chr2:115578080-115586575 (-)
AKR/J ENSMUSG00220035684
 protein coding gene Chr2:115456345-115464841 (-)
BALB/cJ ENSMUSG00180038841
 protein coding gene Chr2:115383210-115391705 (-)
C3H/HeJ ENSMUSG00175024900
 protein coding gene Chr2:115843376-115851873 (-)
C57BL/6NJ ENSMUSG00215028201
 protein coding gene Chr2:115501356-115509859 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024122
 protein coding gene Chr2:111571095-111579636 (-)
CAST/EiJ ENSTCUG00005015873
 protein coding gene Chr2:114782178-114790687 (-)
CBA/J ENSMUSG00210006934
 protein coding gene Chr2:115684342-115692839 (-)
DBA/2J ENSMUSG00185047787
 protein coding gene Chr2:115379917-115388412 (-)
FVB/NJ ENSMUSG00205033414
 protein coding gene Chr2:114594667-114603163 (-)
JF1/MsJ ENSUMUG00000016215
 protein coding gene Chr2:115239865-115248368 (-)
LP/J ENSMUSG00230018590
 protein coding gene Chr2:117189573-117198203 (-)
NOD/ShiLtJ ENSMUSG00190032045
 protein coding gene Chr2:115612697-115621194 (-)
NZO/HlLtJ ENSMUSG00225002505
 protein coding gene Chr2:125091021-125099651 (-)
PWK/PhJ ENSLUMG00010041519
 protein coding gene Chr2:115145104-115153602 (-)
SPRET/EiJ ENSMSPG00010032802
 protein coding gene Chr2:117553084-117560052 (-)
WSB/EiJ ENSIUOG00005028337
 protein coding gene Chr2:115344126-115352623 (-)



Homology
more
  • Human Ortholog
    CCDC9B, coiled-coil domain containing 9B
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC9B, coiled-coil domain containing 9B
  • Synonyms
    C15orf52
  • Links
    NCBI Gene ID: 388115
    UniProt: Q6ZUT6

  • Chr Location
    15q15.1; chr15:40331452-40340939 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Targeted
    5
  • Genomic Mutations
    2 involving Ccdc9b
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    25 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    601
  • Tissues
    2
  • cDNA Data
    12
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045838 Ensembl Gene Model | MGI Sequence Detail 8504 C57BL/6J ±  kb
transcript ENSMUST00000059997 Ensembl | MGI Sequence Detail 4703 Not Applicable  
polypeptide ENSMUSP00000051853 Ensembl | MGI Sequence Detail 500 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Other 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:6156903
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory