Gm336 Pseudogene Detail

Summary

• Symbol
  Gm336
• Name
  predicted pseudogene 336
• Synonyms
  LOC240539

• Feature Type
  pseudogene
• IDs
  MGI:2685182
  NCBI Gene: 240539
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:11067962-11069441 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 7.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685182	pseudogene	Chr19:11067960-11069441 (-)
129S1/SvImJ	ENSMUSG00200053331	pseudogene	Chr19:7747060-7748539 (-)
A/J	ENSMUSG00195053446	pseudogene	Chr19:7960038-7961517 (-)
AKR/J	ENSMUSG00220051414	pseudogene	Chr19:7867941-7869420 (-)
BALB/cJ	ENSMUSG00180051528	pseudogene	Chr19:8321794-8323273 (-)
C3H/HeJ	ENSMUSG00175014981	pseudogene	Chr19:7592777-7594256 (-)
C57BL/6NJ	ENSMUSG00215048779	pseudogene	Chr19:7664360-7665839 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011620	pseudogene	Chr5:56121102-56141129 (-)
CAST/EiJ	ENSTCUG00005043939	pseudogene	Chr19:7469538-7469655 (-)
CBA/J	ENSMUSG00210050492	pseudogene	Chr19:7791338-7792817 (-)
DBA/2J	ENSMUSG00185053267	pseudogene	Chr19:8201079-8202558 (-)
FVB/NJ	ENSMUSG00205053471	pseudogene	Chr19:7680252-7681731 (-)
JF1/MsJ	ENSUMUG00000056974	pseudogene	Chr19:8330949-8332389 (-)
LP/J	ENSMUSG00230054267	pseudogene	Chr19:9121674-9123153 (-)
NOD/ShiLtJ	ENSMUSG00190052308	pseudogene	Chr19:7419610-7421089 (-)
NZO/HlLtJ	ENSMUSG00225047302	pseudogene	Chr19:12830537-12832016 (-)
PWK/PhJ	ENSLUMG00010008594	pseudogene	Chr19:7728764-7730204 (-)
SPRET/EiJ	ENSMSPG00010051019	pseudogene	Chr19:7557892-7558972 (-)
WSB/EiJ	ENSIUOG00005051741	pseudogene	Chr19:7319731-7321210 (-)

Homology

• Gene Tree
  Gm336
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm336
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000101439 (Evidence)
• NCBI Gene
  240539

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101439	Ensembl Gene Model | MGI Sequence Detail	1480	C57BL/6J
transcript	ENSMUST00000186376	Ensembl | MGI Sequence Detail	1480	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360