A930017M01Rik Pseudogene Detail

Summary

• Symbol
  A930017M01Rik
• Name
  RIKEN cDNA A930017M01 gene

• Feature Type
  pseudogene
• IDs
  MGI:2685151
  NCBI Gene: 239410
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:44744790-44748139 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 17.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685151	pseudogene	Chr15:44744790-44748139 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A930017M01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1
• UniProt
  1

• NCBI Gene
  239410

Representative Sequences			Length	Strain/Species
genomic	239410	NCBI Gene Model | MGI Sequence Detail	3350	C57BL/6J
transcript	NR_033609	RefSeq | MGI Sequence Detail	3350	C57BL/6
polypeptide	Q8C4W1	UniProt | EBI | MGI Sequence Detail	558	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR018834 DNA/RNA-binding domain, Est1-type
  IPR045153 Est1/Ebs1-like
  IPR019458 Telomerase activating protein Est1-like, N-terminal
  IPR011990 Tetratricopeptide-like helical domain superfamily

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86