Gm270 Pseudogene Detail

Summary

• Symbol
  Gm270
• Name
  predicted gene 270
• Synonyms
  LOC218241

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:2685116
  NCBI Gene: 118568047
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:49917804-49918779 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 25.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685116	pseudogene	Chr13:49915930-49926527 (+)
129S1/SvImJ	ENSMUSG00200036579	pseudogene	Chr13:47197005-47197980 (+)
A/J	ENSMUSG00195030288	pseudogene	Chr13:46246720-46247695 (+)
AKR/J	ENSMUSG00220009393	pseudogene	Chr13:46062962-46063937 (+)
BALB/cJ	ENSMUSG00180009313	pseudogene	Chr13:46548991-46549966 (+)
C3H/HeJ	ENSMUSG00175029002	pseudogene	Chr13:46519405-46520380 (+)
C57BL/6NJ	ENSMUSG00215006914	pseudogene	Chr13:46665949-46666924 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033382	pseudogene	Chr13:46575008-46575983 (+)
CBA/J	ENSMUSG00210028012	pseudogene	Chr13:46524764-46525739 (+)
DBA/2J	ENSMUSG00185032199	pseudogene	Chr13:47338802-47339777 (+)
FVB/NJ	ENSMUSG00205013227	pseudogene	Chr13:46307511-46308486 (+)
JF1/MsJ	ENSUMUG00000016185	pseudogene	Chr13:46863228-46864203 (+)
LP/J	ENSMUSG00230029610	pseudogene	Chr13:56659574-56660549 (+)
NOD/ShiLtJ	ENSMUSG00190012678	pseudogene	Chr13:46743659-46744634 (+)
NZO/HlLtJ	ENSMUSG00225036603	pseudogene	Chr13:50409990-50410965 (+)
PWK/PhJ	ENSLUMG00010021520	pseudogene	Chr13:45717575-45718550 (+)
SPRET/EiJ	ENSMSPG00010030236	pseudogene	Chr13:45851756-45852731 (+)
WSB/EiJ	ENSIUOG00005027847	pseudogene	Chr13:45884116-45885091 (+)

Homology

• Gene Tree
  Gm270
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm270
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  5

• Ensembl
  ENSMUSG00000113823 (Evidence)
• NCBI Gene
  118568047

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113823	Ensembl Gene Model | MGI Sequence Detail	976	C57BL/6J
transcript	ENSMUST00000223010	Ensembl | MGI Sequence Detail	976	Not Applicable
polypeptide	XP_036014143	RefSeq | MGI Sequence Detail	591	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm270:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119736	Chr13:49915948-49915963 (+)	-1,848 bp