D130052B06Rik Gene Detail

Summary

• Symbol
  D130052B06Rik
• Name
  RIKEN cDNA D130052B06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2685092
  NCBI Gene: 216644
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:33557803-33575315 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 19.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  801 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685092	lncRNA gene	Chr11:33549302-33575618 (+)
129S1/SvImJ	ENSMUSG00200010420	lncRNA gene	Chr11:30586971-30613569 (+)
A/J	ENSMUSG00195014305	lncRNA gene	Chr11:30494543-30521142 (+)
AKR/J	ENSMUSG00220008760	lncRNA gene	Chr11:30689566-30716195 (+)
BALB/cJ	ENSMUSG00180008281	lncRNA gene	Chr11:30521300-30547742 (+)
C3H/HeJ	ENSMUSG00175017540	lncRNA gene	Chr11:30501397-30527984 (+)
C57BL/6NJ	ENSMUSG00215011045	lncRNA gene	Chr11:30458714-30485324 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016197	protein coding gene	Chr11:29192282-29219076 (+)
CAST/EiJ	ENSTCUG00005029564	lncRNA gene	Chr11:30389796-30415738 (+)
CBA/J	ENSMUSG00210010115	lncRNA gene	Chr11:30390646-30417263 (+)
DBA/2J	ENSMUSG00185019608	lncRNA gene	Chr11:30580304-30606915 (+)
FVB/NJ	ENSMUSG00205022523	lncRNA gene	Chr11:30578999-30605611 (+)
JF1/MsJ	ENSUMUG00000005278	lncRNA gene	Chr11:30841092-30868083 (+)
LP/J	ENSMUSG00230004020	lncRNA gene	Chr11:31739147-31765583 (+)
NOD/ShiLtJ	ENSMUSG00190025462	lncRNA gene	Chr11:30671114-30697996 (+)
NZO/HlLtJ	ENSMUSG00225030882	lncRNA gene	Chr11:33637269-33663765 (+)
PWK/PhJ	ENSLUMG00010017699	lncRNA gene	Chr11:30497255-30523985 (+)
SPRET/EiJ	ENSMSPG00010020247	lncRNA gene	Chr11:30870956-30897392 (+)
WSB/EiJ	ENSIUOG00005013804	lncRNA gene	Chr11:30573682-30600242 (+)

Homology

• Gene Tree
  D130052B06Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  14 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000073052 (Evidence)
• NCBI Gene
  216644

Representative Sequences			Length	Strain/Species
genomic	216644	NCBI Gene Model | MGI Sequence Detail	17513	C57BL/6J
transcript	AK051482	GenBank | ENA | DDBJ | MGI Sequence Detail	2532	C57BL/6J
polypeptide	Q3UW13	UniProt | EBI | MGI Sequence Detail	202	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563