Ccdc110 MGI Mouse Gene Detail - MGI:2685018 - coiled-coil domain containing 110

Symbol

Ccdc110
Name

coiled-coil domain containing 110
Synonyms

LOC212392

Feature Type

protein coding gene
IDs

MGI:2685018
NCBI Gene: 212392
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr8:46387656-46397182 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 25.92 cM
Mapping Data

1 experiment

SNPs within 2kb

336 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685018	protein coding gene	Chr8:46387656-46398643 (+)
129S1/SvImJ	ENSMUSG00200006059	protein coding gene	Chr8:41499707-41509239 (+)
A/J	ENSMUSG00195003874	protein coding gene	Chr8:41991987-42001518 (+)
AKR/J	ENSMUSG00220004199	protein coding gene	Chr8:41808738-41818268 (+)
BALB/cJ	ENSMUSG00180002799	protein coding gene	Chr8:41533010-41542545 (+)
C3H/HeJ	ENSMUSG00175004919	protein coding gene	Chr8:41661357-41670893 (+)
C57BL/6NJ	ENSMUSG00215007765	protein coding gene	Chr8:41464102-41473637 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031023	protein coding gene	Chr8:39548241-39557629 (+)
CAST/EiJ	ENSTCUG00005019542	protein coding gene	Chr8:41503167-41512762 (+)
CBA/J	ENSMUSG00210018845	protein coding gene	Chr8:41557532-41567063 (+)
DBA/2J	ENSMUSG00185005754	protein coding gene	Chr8:47403875-47413410 (+)
FVB/NJ	ENSMUSG00205002519	protein coding gene	Chr8:40687121-40696658 (+)
JF1/MsJ	ENSUMUG00000012414	protein coding gene	Chr8:49069837-49079451 (+)
LP/J	ENSMUSG00230015421	protein coding gene	Chr8:51096482-51106005 (+)
NOD/ShiLtJ	ENSMUSG00190005768	protein coding gene	Chr8:41576977-41586509 (+)
NZO/HlLtJ	ENSMUSG00225011715	protein coding gene	Chr8:54690024-54699557 (+)
PWK/PhJ	ENSLUMG00010009222	protein coding gene	Chr8:41338228-41347810 (+)
SPRET/EiJ	ENSMSPG00010005440	protein coding gene	Chr8:42204773-42214280 (+)
WSB/EiJ	ENSIUOG00005002509	protein coding gene	Chr8:42409070-42418613 (+)

Human Ortholog

CCDC110, coiled-coil domain containing 110

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

CCDC110, coiled-coil domain containing 110
Synonyms

CT52, KM-HN-1, KMHN1
Links

HGNC:28504

NCBI Gene ID: 256309

UniProt: Q8TBZ0
Chr Location

4q35.1; chr4:185445182-185471752 (-) GRCh38

MGI Vertebrate Homology

Ccdc110 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: CCDC110
Gene Tree

Ccdc110

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Phenotype Summary

6 phenotypes from 1 allele in 1 genetic background
8 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (other)

1
Endonuclease-mediated

4
Targeted

2
Genomic Mutations

1 involving Ccdc110
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

60 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

4
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

618
Tissues

1
cDNA Data

8
Literature Summary

1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

34
RefSeq

4
UniProt

2
CCDS

CCDS22282.1

Ensembl

ENSMUSG00000071104 (Evidence)
NCBI Gene

212392

			Length	Strain/Species	Flank
genomic	ENSMUSG00000071104	Ensembl Gene Model \| MGI Sequence Detail	9527	C57BL/6J	± kb
transcript	ENSMUST00000095326	Ensembl \| MGI Sequence Detail	2656	Not Applicable
polypeptide	ENSMUSP00000092964	Ensembl \| MGI Sequence Detail	848	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000029310 coiled-coil domain-containing protein 110

(term hierarchy)
InterPro Domains

IPR063797 Coiled-coil domain-containing protein 110, coiled coil domain

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All nucleic 8

cDNA 8

Microarray probesets 2

Summaries

All 30

Developmental Gene Expression 1

Gene Ontology 3

Phenotypes 8
Earliest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Ccdc110:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77175	Chr8:46387647-46387698 (+)	17 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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