Klrh1 Gene Detail

Summary

• Symbol
  Klrh1
• Name
  killer cell lectin-like receptor subfamily H, member 1
• Synonyms
  Gm156, LOC232415

• Feature Type
  protein coding gene
• IDs
  MGI:2685002
  NCBI Gene: 232415
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:129743531-129761233 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  658 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685002	protein coding gene	Chr6:129743531-129761233 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0031360	protein coding gene	Chr6:133444805-133461616 (-)
A/J	MGP_AJ_G0031331	protein coding gene	Chr6:128330919-128361437 (-)
AKR/J	MGP_AKRJ_G0031259	protein coding gene	Chr6:131842433-131859387 (-)
BALB/cJ	MGP_BALBcJ_G0031338	protein coding gene	Chr6:127986417-128008096 (-)
C3H/HeJ	MGP_C3HHeJ_G0031061	protein coding gene	Chr6:132037576-132073414 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031797	protein coding gene	Chr6:137019148-137051674 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0030440	protein coding gene	Chr6:132300657-132314412 (-)
CBA/J	MGP_CBAJ_G0031022	protein coding gene	Chr6:142335402-142352214 (-)
DBA/2J	MGP_DBA2J_G0031179	protein coding gene	Chr6:127290978-127305326 (-)
FVB/NJ	MGP_FVBNJ_G0031129	protein coding gene	Chr6:126173166-126187774 (-)
LP/J	MGP_LPJ_G0031259	protein coding gene	Chr6:133654325-133672657 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031167	protein coding gene	Chr6:146226365-146240118 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031830	protein coding gene	Chr6:131914075-131928830 (-)
PWK/PhJ	MGP_PWKPhJ_G0030158	protein coding gene	Chr6:125579602-125595731 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029987	protein coding gene	Chr6:129925442-129936502 (-)
WSB/EiJ	MGP_WSBEiJ_G0030528	protein coding gene	Chr6:132365925-132378501 (-)

Homology

• MGI Vertebrate Homology
  Klrh1 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Klrh1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  21 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  4
• UniProt
  4
• CCDS
  CCDS20595.1, CCDS90128.1

• Ensembl
  ENSMUSG00000071158 (Evidence)
• NCBI Gene
  232415

Representative Sequences			Length	Strain/Species
genomic	232415	NCBI Gene Model | MGI Sequence Detail	17703	C57BL/6J
transcript	NM_001356340	RefSeq | MGI Sequence Detail	2000	C57BL/6
polypeptide	NP_001014997	RefSeq | MGI Sequence Detail	223	C57BL/6

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR042808 C-type lectin domain family 7 member A
  IPR016187 C-type lectin fold
  IPR001304 C-type lectin-like
  IPR016186 C-type lectin-like/link domain superfamily
  IPR033992 Natural killer cell receptor-like, C-type lectin-like domain

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:6331109

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42