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Snhg3 Gene Detail
Summary
  • Symbol
    Snhg3
  • Name
    small nucleolar RNA host gene 3
  • Synonyms
    Rnu17d, U17HG
Location &
Maps
more
  • Sequence Map
    Chr4:132079244-132080997 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684817
 lncRNA gene Chr4:132075325-132080997 (-)
129S1/SvImJ ENSMUSG00200021022
 lncRNA gene Chr4:125529893-125535766 (-)
A/J ENSMUSG00195046307
 lncRNA gene Chr4:126854433-126860105 (-)
AKR/J ENSMUSG00220047401
 lncRNA gene Chr4:125846189-125851861 (-)
BALB/cJ ENSMUSG00180049169
 lncRNA gene Chr4:124488198-124493870 (-)
C3H/HeJ ENSMUSG00175049407
 lncRNA gene Chr4:125500592-125506264 (-)
C57BL/6NJ ENSMUSG00215052448
 lncRNA gene Chr4:127004489-127010161 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013706
 unclassified non-coding RNA gene Chr4:121981018-121986028 (-)
CAST/EiJ ENSTCUG00005047934
 lncRNA gene Chr4:126403146-126408845 (-)
CBA/J ENSMUSG00210053936
 lncRNA gene Chr4:125129553-125135225 (-)
DBA/2J ENSMUSG00185053323
 lncRNA gene Chr4:126661958-126667623 (-)
FVB/NJ ENSMUSG00205047515
 lncRNA gene Chr4:124903240-124908921 (-)
JF1/MsJ ENSUMUG00000046983
 lncRNA gene Chr4:127328429-127334124 (-)
LP/J ENSMUSG00230038876
 lncRNA gene Chr4:130468376-130474249 (-)
NOD/ShiLtJ ENSMUSG00190049681
 lncRNA gene Chr4:124894272-124899936 (-)
NZO/HlLtJ ENSMUSG00225026631
 lncRNA gene Chr4:136372573-136378245 (-)
PWK/PhJ ENSLUMG00010049984
 lncRNA gene Chr4:124347418-124352637 (-)
SPRET/EiJ ENSMSPG00010044881
 lncRNA gene Chr4:126420572-126426437 (-)
WSB/EiJ ENSIUOG00005044705
 lncRNA gene Chr4:124783643-124789297 (-)



Homology
more
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
  • Synonyms
    NCRNA00014, RNU17C, RNU17D, U17HG, U17HG-A, U17HG-AB
  • Links
    NCBI Gene ID: 8420

  • Chr Location
    1p35.3; chr1:28505943-28510892 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Snhg3
  • Find Mice (IMSR)
    99 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    604
  • Tissues
    4
  • cDNA Data
    17
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 399101 NCBI Gene Model | MGI Sequence Detail 1754 C57BL/6J ±  kb
transcript NR_003270 RefSeq | MGI Sequence Detail 437 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 18
    cDNA 17
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:48643 Pelczar P, et al., The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Mol Cell Biol. 1998 Aug;18(8):4509-18
  • Latest
    J:362775 Xie X, et al., LncRNA-Snhg3 regulates mouse hepatic glycogenesis under normal chow diet. FASEB J. 2024 Aug 15;38(15):e23880
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory