BC046401 Gene Detail

Summary

• Symbol
  BC046401
• Name
  cDNA sequence BC046401

• Feature Type
  lncRNA gene
• IDs
  MGI:2683561
  NCBI Gene: 394191
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:165699604-165700954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 86.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2683561	lncRNA gene	Chr2:165699604-165700954 (+)
129S1/SvImJ	ENSMUSG00200017563	lncRNA gene	Chr2:162582461-162583810 (+)
A/J	ENSMUSG00195026047	lncRNA gene	Chr2:162924505-162925855 (+)
AKR/J	ENSMUSG00220014498	lncRNA gene	Chr2:162255897-162257247 (+)
BALB/cJ	ENSMUSG00180038361	lncRNA gene	Chr2:162378147-162379498 (+)
C3H/HeJ	ENSMUSG00175044774	lncRNA gene	Chr2:163123424-163124774 (+)
C57BL/6NJ	ENSMUSG00215037592	lncRNA gene	Chr2:162574215-162575565 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013621	unclassified non-coding RNA gene	Chr2:157802135-157803481 (+)
CAST/EiJ	ENSTCUG00005047580	lncRNA gene	Chr2:161483903-161485283 (+)
CBA/J	ENSMUSG00210043328	lncRNA gene	Chr2:163058647-163059996 (+)
DBA/2J	ENSMUSG00185026025	lncRNA gene	Chr2:162790581-162791931 (+)
FVB/NJ	ENSMUSG00205026868	lncRNA gene	Chr2:161811523-161812873 (+)
JF1/MsJ	ENSUMUG00000048199	lncRNA gene	Chr2:162432379-162433749 (+)
LP/J	ENSMUSG00230013910	lncRNA gene	Chr2:164343435-164344784 (+)
NOD/ShiLtJ	ENSMUSG00190043168	lncRNA gene	Chr2:162463550-162464900 (+)
NZO/HlLtJ	ENSMUSG00225053890	lncRNA gene	Chr2:172352816-172354166 (+)
PWK/PhJ	ENSLUMG00010048392	lncRNA gene	Chr2:162336609-162337980 (+)
SPRET/EiJ	ENSMSPG00010030410	lncRNA gene	Chr2:165085332-165086717 (+)
WSB/EiJ	ENSIUOG00005046609	lncRNA gene	Chr2:162186441-162187791 (+)

Homology

• Gene Tree
  BC046401
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085274 (Evidence)
• NCBI Gene
  394191

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085274	Ensembl Gene Model | MGI Sequence Detail	1351	C57BL/6J
transcript	ENSMUST00000155786	Ensembl | MGI Sequence Detail	847	Not Applicable

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9