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BC046401 Gene Detail
Summary
  • Symbol
    BC046401
  • Name
    cDNA sequence BC046401
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2683561
    NCBI Gene: 394191
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr2:165699604-165700954 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 2, 86.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2683561
lncRNA gene Chr2:165699604-165700954 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015489
unclassified non-coding RNA gene Chr2:171448309-171449658 (+)
A/J MGP_AJ_G0015466
unclassified non-coding RNA gene Chr2:164419813-164421163 (+)
AKR/J MGP_AKRJ_G0015430
unclassified non-coding RNA gene Chr2:169329142-169330492 (+)
BALB/cJ MGP_BALBcJ_G0015429
unclassified non-coding RNA gene Chr2:164780714-164782064 (+)
C3H/HeJ MGP_C3HHeJ_G0015252
unclassified non-coding RNA gene Chr2:169678446-169679796 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015883
unclassified non-coding RNA gene Chr2:176426035-176427385 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013621
unclassified non-coding RNA gene Chr2:157802135-157803481 (+)
CAST/EiJ MGP_CASTEiJ_G0014804
unclassified non-coding RNA gene Chr2:170105482-170106862 (+)
CBA/J MGP_CBAJ_G0015233
unclassified non-coding RNA gene Chr2:182865367-182866717 (+)
DBA/2J MGP_DBA2J_G0015327
unclassified non-coding RNA gene Chr2:163571076-163572426 (+)
FVB/NJ MGP_FVBNJ_G0015334
unclassified non-coding RNA gene Chr2:162035952-162037302 (+)
LP/J MGP_LPJ_G0015405
unclassified non-coding RNA gene Chr2:171482372-171483721 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015358
unclassified non-coding RNA gene Chr2:186343617-186344967 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015923
unclassified non-coding RNA gene Chr2:169221967-169223317 (+)
PWK/PhJ MGP_PWKPhJ_G0014592
unclassified non-coding RNA gene Chr2:163186451-163187822 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014380
unclassified non-coding RNA gene Chr2:168141966-168143344 (+)
WSB/EiJ MGP_WSBEiJ_G0014911
unclassified non-coding RNA gene Chr2:170122189-170123539 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085274 Ensembl Gene Model | MGI Sequence Detail 1351 C57BL/6J ±  kb
transcript ENSMUST00000155786 Ensembl | MGI Sequence Detail 847 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory