Pramel39-ps Pseudogene Detail

Summary

• Symbol
  Pramel39-ps
• Name
  PRAME like 39, pseudogene
• Synonyms
  A430089I19Rik, Gm16522, Pramel39

• Feature Type
  pseudogene
• IDs
  MGI:2683305
  NCBI Gene: 331195
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:94450679-94453474 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.29 cM
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2683305	pseudogene	Chr5:94450378-94454655 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Protein SuperFamily
  PRAME
• Gene Tree
  Pramel39-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Targeted
  2
• Genomic Mutations
  3 involving Pramel39-ps
• Find Mice (IMSR)
  17 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS51557.1

• Ensembl
  ENSMUSG00000094560 (Evidence)
• NCBI Gene
  331195

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094560	Ensembl Gene Model | MGI Sequence Detail	2796	C57BL/6J
transcript	ENSMUST00000097479	Ensembl | MGI Sequence Detail	1446	Not Applicable
polypeptide	Q8C9W1	UniProt | EBI | MGI Sequence Detail	407	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR032675 Leucine-rich repeat domain superfamily
  IPR026271 PRAME
  IPR050694 PRAME domain-containing protein

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:4360987, MGI:6430537, MGI:7430717

References

• Summaries
  All 19

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42