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Rcsd1 Gene Detail
Summary
  • Symbol
    Rcsd1
  • Name
    RCSD domain containing 1
  • Synonyms
    A430105K13Rik, MGC:32399
  • Feature Type
    protein coding gene
  • IDs
    MGI:2676394
    NCBI Gene: 226594
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:165476503-165537632 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 72.99 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    692 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676394
 protein coding gene Chr1:165474085-165537632 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016696
 protein coding gene Chr1:171139516-171209701 (-)
A/J MGP_AJ_G0016677
 protein coding gene Chr1:164155269-164219408 (-)
AKR/J MGP_AKRJ_G0016643
 protein coding gene Chr1:169119382-169194901 (-)
BALB/cJ MGP_BALBcJ_G0016638
 protein coding gene Chr1:164651803-164717132 (-)
C3H/HeJ MGP_C3HHeJ_G0016462
 protein coding gene Chr1:169342586-169417305 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017099
 protein coding gene Chr1:176882525-176954032 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014808
 protein coding gene Chr1:156054201-156116508 (-)
CAST/EiJ MGP_CASTEiJ_G0016042
 protein coding gene Chr1:168965233-169039596 (-)
CBA/J MGP_CBAJ_G0016437
 protein coding gene Chr1:183148316-183240047 (-)
DBA/2J MGP_DBA2J_G0016543
 protein coding gene Chr1:163038472-163101496 (-)
FVB/NJ MGP_FVBNJ_G0016541
 protein coding gene Chr1:161478428-161544567 (-)
LP/J MGP_LPJ_G0016614
 protein coding gene Chr1:172201434-172272944 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016566
 protein coding gene Chr1:190658200-190725636 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017135
 protein coding gene Chr1:168980994-169050588 (-)
PWK/PhJ MGP_PWKPhJ_G0015828
 protein coding gene Chr1:162244018-162309300 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015615
 protein coding gene Chr1:167833590-167901360 (-)
WSB/EiJ MGP_WSBEiJ_G0016104
 protein coding gene Chr1:169133140-169203110 (-)



Homology
more
  • Human Ortholog
    RCSD1, RCSD domain containing 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RCSD1, RCSD domain containing 1
  • Synonyms
    CAPZIP, MK2S4
  • Links
    NCBI Gene ID: 92241
    neXtProt AC: NX_Q6JBY9
    UniProt: Q6JBY9

  • Chr Location
    1q24.2; chr1:167630093-167708696 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    944
  • Tissues
    20
  • cDNA Data
    28
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 226594 NCBI Gene Model | MGI Sequence Detail 61130 C57BL/6J ±  kb
transcript NM_178593 RefSeq | MGI Sequence Detail 2670 C57BL/6  
polypeptide Q3UZA1 UniProt | EBI | MGI Sequence Detail 412 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 32
    cDNA 31
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1925181
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:334527 Weiss AC, et al., Permissive ureter specification by TBX18-mediated repression of metanephric gene expression. Development. 2023 Mar 15;150(6):dev201048
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory