Cypt2 Gene Detail

Summary

• Symbol
  Cypt2
• Name
  cysteine-rich perinuclear theca 2
• Synonyms
  Ckt1

• Feature Type
  protein coding gene
• IDs
  MGI:2676331
  NCBI Gene: 245566
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:104543378-104544245 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.93 cM, cytoband C3
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2676331	protein coding gene	ChrX:104543363-104544245 (+)
129S1/SvImJ	ENSMUSG00200037742	protein coding gene	ChrX:86337133-86338000 (+)
A/J	ENSMUSG00195036690	protein coding gene	ChrX:90070778-90071645 (+)
AKR/J	ENSMUSG00220035860	protein coding gene	ChrX:84763351-84764218 (+)
BALB/cJ	ENSMUSG00180037948	protein coding gene	ChrX:86736957-86737824 (+)
C3H/HeJ	ENSMUSG00175039435	protein coding gene	ChrX:90312820-90313687 (+)
C57BL/6NJ	ENSMUSG00215045266	protein coding gene	ChrX:86923008-86923875 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033321	protein coding gene	ChrX:99597347-99598196 (+)
CAST/EiJ	ENSTCUG00005038392	protein coding gene	ChrX:87771897-87772806 (+)
CBA/J	ENSMUSG00210042613	protein coding gene	ChrX:87206454-87207321 (+)
DBA/2J	ENSMUSG00185042153	protein coding gene	ChrX:99650883-99651750 (+)
FVB/NJ	ENSMUSG00205025296	protein coding gene	ChrX:86278970-86279837 (+)
JF1/MsJ	ENSUMUG00000024190	protein coding gene	ChrX:120286095-120286997 (+)
LP/J	ENSMUSG00230039310	protein coding gene	ChrX:106337899-106338766 (+)
NOD/ShiLtJ	ENSMUSG00190035072	protein coding gene	ChrX:86387322-86388189 (+)
NZO/HlLtJ	ENSMUSG00225039654	protein coding gene	ChrX:111465194-111466061 (+)
PWK/PhJ	ENSLUMG00010033150	protein coding gene	ChrX:85545605-85546507 (+)
SPRET/EiJ	ENSMSPG00010035761	protein coding gene	ChrX:89769369-89770278 (+)
WSB/EiJ	ENSIUOG00005039777	protein coding gene	ChrX:86899988-86900855 (+)

Homology

• Gene Tree
  Cypt2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Targeted
  1
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  4
• CCDS
  CCDS30335.1

• Ensembl
  ENSMUSG00000090132 (Evidence)
• NCBI Gene
  245566

Representative Sequences			Length	Strain/Species
genomic	245566	NCBI Gene Model | MGI Sequence Detail	868	C57BL/6J
transcript	NM_173436	RefSeq | MGI Sequence Detail	712	C57BL/6
polypeptide	NP_775612	RefSeq | MGI Sequence Detail	180	C57BL/6

Protein
Information

• UniProt
  4 Sequences

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 3
• Earliest
  J:100561 Kitamura K, et al., Characterization of a novel postacrosomal perinuclear theca-specific protein, CYPT1. Biol Reprod. 2004 Dec;71(6):1927-35
• Latest
  J:105251 Hansen MA, et al., Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Mol Reprod Dev. 2006 Feb 13;73(5):568-579

TSS for Cypt2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161752	ChrX:104543374-104543379 (+)	-1 bp