Vaultrc5 Gene Detail

Summary

• Symbol
  Vaultrc5
• Name
  vault RNA component 5
• Synonyms
  Gm22653, Mvg1

• Feature Type
  lncRNA gene
• IDs
  MGI:2673990
  NCBI Gene: 378472
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:36934919-36935061 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.46 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2673990	lncRNA gene	Chr18:36934816-36935160 (+)
129S1/SvImJ	ENSMUSG00200044605	unclassified non-coding RNA gene	Chr18:33934030-33934172 (+)
A/J	ENSMUSG00195038345	unclassified non-coding RNA gene	Chr18:34094173-34094315 (+)
AKR/J	ENSMUSG00220017794	unclassified non-coding RNA gene	Chr18:34077159-34077301 (+)
BALB/cJ	ENSMUSG00180022657	unclassified non-coding RNA gene	Chr18:34543827-34543969 (+)
C3H/HeJ	ENSMUSG00175043551	unclassified non-coding RNA gene	Chr18:34065869-34066011 (+)
C57BL/6NJ	ENSMUSG00215031690	unclassified non-coding RNA gene	Chr18:33804298-33804440 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024319	unclassified non-coding RNA gene	Chr18:33709155-33709297 (+)
CBA/J	ENSMUSG00210021734	unclassified non-coding RNA gene	Chr18:34085848-34085990 (+)
DBA/2J	ENSMUSG00185021142	unclassified non-coding RNA gene	Chr18:34020455-34020597 (+)
FVB/NJ	ENSMUSG00205033357	unclassified non-coding RNA gene	Chr18:33738971-33739113 (+)
JF1/MsJ	ENSUMUG00000049206	unclassified non-coding RNA gene	Chr18:34174895-34175037 (+)
LP/J	ENSMUSG00230049374	unclassified non-coding RNA gene	Chr18:36130733-36130875 (+)
NOD/ShiLtJ	ENSMUSG00190024281	unclassified non-coding RNA gene	Chr18:33814203-33814345 (+)
NZO/HlLtJ	ENSMUSG00225046922	unclassified non-coding RNA gene	Chr18:36036041-36036183 (+)
PWK/PhJ	ENSLUMG00010013575	unclassified non-coding RNA gene	Chr18:34337735-34337877 (+)
SPRET/EiJ	ENSMSPG00010024626	unclassified non-coding RNA gene	Chr18:34379376-34379518 (+)
WSB/EiJ	ENSIUOG00005008685	unclassified non-coding RNA gene	Chr18:33790609-33790751 (+)

Homology

• Gene Tree
  Vaultrc5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotypes from 1 allele in 1 genetic background
  2 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  3
• Find Mice (IMSR)
  1 strains or lines available

Homozygous null mice are histologically normal with the exception of slightly reduced hematocrit values and platelet counts.

Gene Ontology
(GO)
Classifications

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00002074846 (Evidence)
• NCBI Gene
  378472

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074846	Ensembl Gene Model | MGI Sequence Detail	143	C57BL/6J
transcript	ENSMUST00020181660	Ensembl | MGI Sequence Detail	143	Not Applicable

Other
Accession IDs

MGI:5452430

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:83675 Kickhoefer VA, et al., Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene. Gene. 2003 May 8;309(2):65-70
• Latest
  J:359009 Prajapat M, et al., The small noncoding RNA Vaultrc5 is dispensable to mouse development. RNA. 2024 Oct 16;30(11):1465-1476

TSS for Vaultrc5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150680	Chr18:36934879-36934895 (+)	-32 bp
Tssr150681	Chr18:36934909-36934935 (+)	3 bp