AA465934 Gene Detail

Summary

• Symbol
  AA465934
• Name
  expressed sequence AA465934

• Feature Type
  lncRNA gene
• IDs
  MGI:2671018
  NCBI Gene: 613254
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:83182525-83185463 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2671018	lncRNA gene	Chr11:83182464-83185897 (+)
129S1/SvImJ	ENSMUSG00200051521	lncRNA gene	Chr11:80302380-80305376 (+)
A/J	ENSMUSG00195045100	lncRNA gene	Chr11:80156844-80159840 (+)
AKR/J	ENSMUSG00220048753	lncRNA gene	Chr11:80378521-80381542 (+)
BALB/cJ	ENSMUSG00180044389	lncRNA gene	Chr11:80371556-80374571 (+)
C3H/HeJ	ENSMUSG00175040779	lncRNA gene	Chr11:80303857-80306853 (+)
C57BL/6NJ	ENSMUSG00215042555	lncRNA gene	Chr11:79955194-79958209 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013326	unclassified non-coding RNA gene	Chr11:78526840-78529556 (+)
CAST/EiJ	ENSTCUG00005045603	lncRNA gene	Chr11:79831876-79834867 (+)
CBA/J	ENSMUSG00210047911	lncRNA gene	Chr11:80121486-80124482 (+)
DBA/2J	ENSMUSG00185041291	lncRNA gene	Chr11:80456809-80459810 (+)
FVB/NJ	ENSMUSG00205048603	lncRNA gene	Chr11:80259130-80262147 (+)
JF1/MsJ	ENSUMUG00000054513	lncRNA gene	Chr11:80772049-80775042 (+)
LP/J	ENSMUSG00230029467	lncRNA gene	Chr11:81471644-81474640 (+)
NOD/ShiLtJ	ENSMUSG00190047423	lncRNA gene	Chr11:80471457-80474472 (+)
NZO/HlLtJ	ENSMUSG00225039599	lncRNA gene	Chr11:83605250-83608269 (+)
PWK/PhJ	ENSLUMG00010025914	lncRNA gene	Chr11:80291111-80294119 (+)
SPRET/EiJ	ENSMSPG00010044074	lncRNA gene	Chr11:80685604-80688603 (+)
WSB/EiJ	ENSIUOG00005036585	lncRNA gene	Chr11:80279624-80282606 (+)

Homology

• Gene Tree
  AA465934
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  2 involving AA465934
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  612
• Tissues
  13
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000093483 (Evidence)
• NCBI Gene
  613254

Representative Sequences			Length	Strain/Species
genomic	613254	NCBI Gene Model | MGI Sequence Detail	2939	C57BL/6J
transcript	NR_028363	RefSeq | MGI Sequence Detail	382	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 4

  Primer pair 3

References

• Summaries
  All 22

  Developmental Gene Expression 2

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:313620 Nabeshima R, et al., Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Elife. 2018 Aug 2;7:e36435

TSS for AA465934:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103677	Chr11:83182497-83182508 (+)	-22 bp
Tssr103678	Chr11:83182509-83182535 (+)	-3 bp
Tssr103679	Chr11:83182545-83182574 (+)	35 bp
Tssr103680	Chr11:83182792-83182793 (+)	268 bp