BC024386 Gene Detail

Summary

• Symbol
  BC024386
• Name
  cDNA sequence BC023486

• Feature Type
  lncRNA gene
• IDs
  MGI:2669313
  NCBI Gene: 212965
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:140485934-140487896 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 86.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2669313	lncRNA gene	Chr7:140485897-140487904 (+)
129S1/SvImJ	ENSMUSG00200046347	lncRNA gene	Chr7:127050656-127052652 (+)
A/J	ENSMUSG00195040559	lncRNA gene	Chr7:131533086-131535082 (+)
AKR/J	ENSMUSG00220035624	lncRNA gene	Chr7:125004439-125006435 (+)
BALB/cJ	ENSMUSG00180041737	lncRNA gene	Chr7:128225248-128227244 (+)
C3H/HeJ	ENSMUSG00175045142	lncRNA gene	Chr7:128953559-128955555 (+)
C57BL/6NJ	ENSMUSG00215047621	lncRNA gene	Chr7:128220103-128222099 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051520	lncRNA gene	Chr7:131526359-131528360 (+)
CBA/J	ENSMUSG00210031725	lncRNA gene	Chr7:128711525-128713521 (+)
DBA/2J	ENSMUSG00185017828	lncRNA gene	Chr7:132990116-132992112 (+)
FVB/NJ	ENSMUSG00205046556	lncRNA gene	Chr7:128632380-128634376 (+)
JF1/MsJ	ENSUMUG00000051235	lncRNA gene	Chr7:138066317-138068488 (+)
LP/J	ENSMUSG00230042929	lncRNA gene	Chr7:139153618-139155614 (+)
NOD/ShiLtJ	ENSMUSG00190034249	lncRNA gene	Chr7:128819025-128821021 (+)
NZO/HlLtJ	ENSMUSG00225052154	lncRNA gene	Chr7:137362855-137364851 (+)
PWK/PhJ	ENSLUMG00010047676	lncRNA gene	Chr7:127198823-127200819 (+)
SPRET/EiJ	ENSMSPG00010045963	lncRNA gene	Chr7:128637304-128639472 (+)
WSB/EiJ	ENSIUOG00005036926	lncRNA gene	Chr7:129554063-129556059 (+)

Homology

• Gene Tree
  BC024386
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving BC024386
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  171
• RefSeq
  1

• Ensembl
  ENSMUSG00000109628 (Evidence)
• NCBI Gene
  212965

Representative Sequences			Length	Strain/Species
genomic	212965	NCBI Gene Model | MGI Sequence Detail	1963	C57BL/6J
transcript	NR_015583	RefSeq | MGI Sequence Detail	1673	C57BL/6

Molecular
Reagents

• All nucleic 13

  cDNA 13

Other
Accession IDs

MGI:2448485

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for BC024386:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69865	Chr7:140485915-140485946 (+)	-3 bp
Tssr69866	Chr7:140485962-140486004 (+)	49 bp
Tssr69867	Chr7:140486984-140486989 (+)	1,053 bp