Tpt1-ps6 Pseudogene Detail

Summary

• Symbol
  Tpt1-ps6
• Name
  tumor protein, translationally-controlled, pseudogene 6
• Synonyms
  Gm16469

• Feature Type
  pseudogene
• IDs
  MGI:2665000
  NCBI Gene: 632454
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:100812141-100812663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 44.63 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2665000	pseudogene	ChrX:100812096-100812865 (+)
129S1/SvImJ	ENSMUSG00200039024	pseudogene	ChrX:82525686-82526208 (+)
A/J	ENSMUSG00195041206	pseudogene	ChrX:86280515-86281037 (+)
AKR/J	ENSMUSG00220038236	pseudogene	ChrX:80971232-80971754 (+)
BALB/cJ	ENSMUSG00180045061	pseudogene	ChrX:82990875-82991397 (+)
C3H/HeJ	ENSMUSG00175043891	pseudogene	ChrX:86651272-86651794 (+)
C57BL/6NJ	ENSMUSG00215046303	pseudogene	ChrX:83181500-83182022 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042362	pseudogene	ChrX:84025987-84026509 (+)
CBA/J	ENSMUSG00210043223	pseudogene	ChrX:83422083-83422605 (+)
DBA/2J	ENSMUSG00185043761	pseudogene	ChrX:95865124-95865646 (+)
FVB/NJ	ENSMUSG00205041687	pseudogene	ChrX:82679789-82680311 (+)
JF1/MsJ	ENSUMUG00000043581	pseudogene	ChrX:116454771-116455293 (+)
LP/J	ENSMUSG00230044080	pseudogene	ChrX:102559195-102559717 (+)
NOD/ShiLtJ	ENSMUSG00190043589	pseudogene	ChrX:82576981-82577503 (+)
NZO/HlLtJ	ENSMUSG00225046536	pseudogene	ChrX:107647089-107647611 (+)
PWK/PhJ	ENSLUMG00010041115	pseudogene	ChrX:81722038-81722545 (+)
SPRET/EiJ	ENSMSPG00010042653	pseudogene	ChrX:86019453-86019975 (+)
WSB/EiJ	ENSIUOG00005043225	pseudogene	ChrX:83103548-83104070 (+)

Homology

• Gene Tree
  Tpt1-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000084284 (Evidence)
• NCBI Gene
  632454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084284	Ensembl Gene Model | MGI Sequence Detail	523	C57BL/6J
transcript	ENSMUST00000121768	Ensembl | MGI Sequence Detail	523	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:3645088

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:83803 Fiucci G, et al., Genomic organization and expression of mouse Tpt1 gene. Genomics. 2003 Jun;81(6):570-8