Tpt1-ps5 Pseudogene Detail

Summary

• Symbol
  Tpt1-ps5
• Name
  tumor protein, translationally-controlled, pseudogene 5
• Synonyms
  Gm6790

• Feature Type
  pseudogene
• IDs
  MGI:2664999
  NCBI Gene: 627798
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:37607811-37608326 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.80 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2664999	pseudogene	Chr9:37607702-37608537 (+)
129S1/SvImJ	ENSMUSG00200040310	pseudogene	Chr9:34595006-34595501 (+)
A/J	ENSMUSG00195049697	pseudogene	Chr9:34381645-34382140 (+)
AKR/J	ENSMUSG00220047999	pseudogene	Chr9:34457904-34458419 (+)
BALB/cJ	ENSMUSG00180049058	pseudogene	Chr9:34509995-34510490 (+)
C3H/HeJ	ENSMUSG00175048235	pseudogene	Chr9:34510987-34511482 (+)
C57BL/6NJ	ENSMUSG00215036078	pseudogene	Chr9:34513719-34514234 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045519	pseudogene	Chr9:34461000-34461515 (+)
CBA/J	ENSMUSG00210046090	pseudogene	Chr9:34499188-34499703 (+)
DBA/2J	ENSMUSG00185037817	pseudogene	Chr9:34607297-34607812 (+)
FVB/NJ	ENSMUSG00205046345	pseudogene	Chr9:34873080-34873595 (+)
JF1/MsJ	ENSUMUG00000045470	pseudogene	Chr9:34701464-34701979 (+)
LP/J	ENSMUSG00230034249	pseudogene	Chr9:34956434-34956949 (+)
NOD/ShiLtJ	ENSMUSG00190035748	pseudogene	Chr9:34625574-34626089 (+)
NZO/HlLtJ	ENSMUSG00225022458	pseudogene	Chr9:34924891-34925406 (+)
PWK/PhJ	ENSLUMG00010046880	pseudogene	Chr9:34643287-34643802 (+)
SPRET/EiJ	ENSMSPG00010034140	pseudogene	Chr9:35199681-35200196 (+)
WSB/EiJ	ENSIUOG00005046859	pseudogene	Chr9:34133067-34133582 (+)

Homology

• Gene Tree
  Tpt1-ps5
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000059252 (Evidence)
• NCBI Gene
  627798

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059252	Ensembl Gene Model | MGI Sequence Detail	516	C57BL/6J
transcript	ENSMUST00000112150	Ensembl | MGI Sequence Detail	516	Not Applicable

Other
Accession IDs

MGI:3643577

References

• Summaries
  All 7
• Earliest
  J:83803 Fiucci G, et al., Genomic organization and expression of mouse Tpt1 gene. Genomics. 2003 Jun;81(6):570-8