Ctsm-ps Pseudogene Detail

Summary

• Symbol
  Ctsm-ps
• Name
  cathepsin M, pseudogene
• Synonyms
  Ctsm-ps2

• Feature Type
  pseudogene
• IDs
  MGI:2656172
  NCBI Gene: 624056
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:61630222-61638143 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 32.74 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2656172	pseudogene	Chr13:61630222-61638143 (-)
129S1/SvImJ	ENSMUSG00200017325	pseudogene	Chr13:58581182-58584841 (-)
A/J	ENSMUSG00195046019	pseudogene	Chr13:58031649-58035291 (-)
AKR/J	ENSMUSG00220044398	pseudogene	Chr13:57558319-57566240 (-)
BALB/cJ	ENSMUSG00180018648	pseudogene	Chr13:58240829-58244473 (-)
C3H/HeJ	ENSMUSG00175046747	pseudogene	Chr13:58032552-58040473 (-)
C57BL/6NJ	ENSMUSG00215040099	pseudogene	Chr13:58040269-58048190 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042071	pseudogene	Chr13:58412111-58415766 (-)
CBA/J	ENSMUSG00210043642	pseudogene	Chr13:58237406-58245327 (-)
DBA/2J	ENSMUSG00185017880	pseudogene	Chr13:59086028-59093949 (-)
FVB/NJ	ENSMUSG00205047119	pseudogene	Chr13:57811048-57818968 (-)
JF1/MsJ	ENSUMUG00000041168	pseudogene	Chr13:58430292-58433934 (-)
LP/J	ENSMUSG00230035772	pseudogene	Chr13:68450781-68458702 (-)
NOD/ShiLtJ	ENSMUSG00190036887	pseudogene	Chr13:58097636-58101296 (-)
NZO/HlLtJ	ENSMUSG00225047490	pseudogene	Chr13:62136477-62144398 (-)
PWK/PhJ	ENSLUMG00010024928	pseudogene	Chr13:57354875-57358518 (-)
SPRET/EiJ	ENSMSPG00010043555	pseudogene	Chr13:57768126-57776049 (-)
WSB/EiJ	ENSIUOG00005026898	pseudogene	Chr13:57580492-57584133 (-)

Homology

• Gene Tree
  Ctsm-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ctsm-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114667 (Evidence)
• NCBI Gene
  624056

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114667	Ensembl Gene Model | MGI Sequence Detail	7922	C57BL/6J
transcript	ENSMUST00000225450	Ensembl | MGI Sequence Detail	1078	Not Applicable

Other
Accession IDs

MGI:3643776

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:74618 Deussing J, et al., Identification and characterization of a dense cluster of placenta-specific cysteine peptidase genes and related genes on mouse chromosome 13. Genomics. 2002 Feb;79(2):225-40