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Scgb1c1 Gene Detail
Summary
  • Symbol
    Scgb1c1
  • Name
    secretoglobin, family 1C, member 1
  • Synonyms
    Ryd5
  • Feature Type
    protein coding gene
  • IDs
    MGI:2655401
    NCBI Gene: 338417
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140425478-140426682 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 86.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2655401
 protein coding gene Chr7:140425460-140426682 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033193
 protein coding gene Chr7:145980398-145981620 (+)
A/J MGP_AJ_G0033175
 protein coding gene Chr7:141829635-141830857 (+)
AKR/J MGP_AKRJ_G0033107
 protein coding gene Chr7:145715908-145717130 (+)
BALB/cJ MGP_BALBcJ_G0033176
 protein coding gene Chr7:141556393-141557615 (+)
C3H/HeJ MGP_C3HHeJ_G0032890
 protein coding gene Chr7:145474438-145475660 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033687
 protein coding gene Chr7:151319958-151321180 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030660
 protein coding gene Chr7:143038772-143040001 (+)
CAST/EiJ MGP_CASTEiJ_G0032220
 protein coding gene Chr7:137771583-137772805 (+)
CBA/J MGP_CBAJ_G0032862
 protein coding gene Chr7:156450292-156451514 (+)
DBA/2J MGP_DBA2J_G0033015
 protein coding gene Chr7:139767361-139768583 (+)
FVB/NJ MGP_FVBNJ_G0032967
 protein coding gene Chr7:139677477-139678699 (+)
LP/J MGP_LPJ_G0033109
 protein coding gene Chr7:147481063-147482285 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033000
 protein coding gene Chr7:157117754-157118976 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033707
 protein coding gene Chr7:144702209-144703431 (+)
PWK/PhJ MGP_PWKPhJ_G0031925
 protein coding gene Chr7:133035723-133036945 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031771
 protein coding gene Chr7:131521290-131522512 (+)
WSB/EiJ MGP_WSBEiJ_G0032331
 protein coding gene Chr7:145622011-145623233 (+)



Homology
more
  • Human Ortholog
    SCGB1C1, secretoglobin family 1C member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SCGB1C1, secretoglobin family 1C member 1
  • Synonyms
    RYD5
  • Links
    NCBI Gene ID: 147199
    neXtProt AC: NX_Q8TD33
    UniProt: Q8TD33

  • Chr Location
    11p15.5; chr11:188050-194575 (+)  GRCh38
  • Human Ortholog
    SCGB1C2, secretoglobin family 1C member 2
  • Synonyms
    SCGB1C1
  • Links
    NCBI Gene ID: 653486
    neXtProt AC: NX_P0DMR2, NX_Q8TD33
    UniProt: P0DMR2

  • Chr Location
    17p13.3; chr17:137569-139067 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    8
  • Endonuclease-mediated
    1
  • Gene trapped
    4
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Scgb1c1
  • Find Mice (IMSR)
    7 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 338417 NCBI Gene Model | MGI Sequence Detail 1205 C57BL/6J ±  kb
transcript NM_001099742 RefSeq | MGI Sequence Detail 451 C57BL/6  
polypeptide Q7M742 UniProt | EBI | MGI Sequence Detail 95 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory