Junos Gene Detail

Summary

• Symbol
  Junos
• Name
  jun proto-oncogene, opposite strand
• Synonyms
  BC042782

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2652837
  NCBI Gene: 230451
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr4:94939771-95055555 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  911 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2652837	antisense lncRNA gene	Chr4:94939771-95057273 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003918	antisense lncRNA gene	Chr4:95102475-95236314 (+)
A/J	MGP_AJ_G0003898	antisense lncRNA gene	Chr4:91779304-91898912 (+)
AKR/J	MGP_AKRJ_G0003875	antisense lncRNA gene	Chr4:93975771-94100896 (+)
BALB/cJ	MGP_BALBcJ_G0003884	antisense lncRNA gene	Chr4:92020546-92135824 (+)
C3H/HeJ	MGP_C3HHeJ_G0003831	antisense lncRNA gene	Chr4:94795854-94920894 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004032	antisense lncRNA gene	Chr4:98757929-98885140 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003522	antisense lncRNA gene	Chr4:87274054-87390134 (+)
CAST/EiJ	MGP_CASTEiJ_G0003795	antisense lncRNA gene	Chr4:92657567-92776639 (+)
CBA/J	MGP_CBAJ_G0003824	antisense lncRNA gene	Chr4:101757489-101889511 (+)
DBA/2J	MGP_DBA2J_G0003841	antisense lncRNA gene	Chr4:91570208-91685209 (+)
FVB/NJ	MGP_FVBNJ_G0003859	antisense lncRNA gene	Chr4:90433558-90546130 (+)
LP/J	MGP_LPJ_G0003920	antisense lncRNA gene	Chr4:95426665-95561719 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003847	antisense lncRNA gene	Chr4:107526645-107650231 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004027	antisense lncRNA gene	Chr4:94269508-94385752 (+)
PWK/PhJ	MGP_PWKPhJ_G0003750	antisense lncRNA gene	Chr4:89711208-89829407 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003696	antisense lncRNA gene	Chr4:91665611-91785993 (+)
WSB/EiJ	MGP_WSBEiJ_G0003830	antisense lncRNA gene	Chr4:94406223-94530507 (+)

Homology

• Gene Tree
  Junos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Junos
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  7

• Ensembl
  ENSMUSG00000087366 (Evidence)
• NCBI Gene
  230451

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087366	Ensembl Gene Model | MGI Sequence Detail	115785	C57BL/6J
transcript	ENSMUST00000241925	Ensembl | MGI Sequence Detail	1900	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Junos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37812	Chr4:94940797-94940810 (+)	1,033 bp
Tssr37813	Chr4:94941094-94941110 (+)	1,331 bp
Tssr37814	Chr4:94942328-94942329 (+)	2,558 bp
Tssr37815	Chr4:94942914-94942918 (+)	3,145 bp
Tssr37816	Chr4:94963989-94964028 (+)	24,238 bp
Tssr37817	Chr4:94981762-94981773 (+)	41,997 bp
Tssr37818	Chr4:94992580-94992582 (+)	52,810 bp
Tssr37819	Chr4:95049700-95049727 (+)	109,943 bp
Tssr37820	Chr4:95049750-95049759 (+)	109,984 bp