4930442P19Rik Gene Detail

Summary

• Symbol
  4930442P19Rik
• Name
  RIKEN cDNA 4930442P19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2447822
  NCBI Gene: 321013
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:35548017-35549256 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 18.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447822	lncRNA gene	Chr5:35548017-35549256 (-)
129S1/SvImJ	ENSMUSG00200033251	unclassified gene	Chr5:31017224-31018463 (-)
A/J	ENSMUSG00195029440	unclassified gene	Chr5:30494080-30495319 (-)
AKR/J	ENSMUSG00220002666	unclassified gene	Chr5:30514424-30515663 (-)
BALB/cJ	ENSMUSG00180039213	unclassified gene	Chr5:30296956-30298195 (-)
C3H/HeJ	ENSMUSG00175020160	unclassified gene	Chr5:32276505-32277744 (-)
C57BL/6NJ	ENSMUSG00215006426	unclassified gene	Chr5:31014464-31015703 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001236	unclassified gene	Chr5:30335653-30336903 (-)
CAST/EiJ	ENSTCUG00005024637	unclassified gene	Chr5:30491247-30492487 (-)
CBA/J	ENSMUSG00210005057	unclassified gene	Chr5:31245333-31246572 (-)
DBA/2J	ENSMUSG00185017837	unclassified gene	Chr5:33109698-33110937 (-)
FVB/NJ	ENSMUSG00205043743	unclassified gene	Chr5:29990054-29991293 (-)
JF1/MsJ	ENSUMUG00000053912	unclassified gene	Chr5:37705297-37706536 (-)
LP/J	ENSMUSG00230048787	unclassified gene	Chr5:37720857-37722096 (-)
NOD/ShiLtJ	ENSMUSG00190016420	unclassified gene	Chr5:30272082-30273321 (-)
NZO/HlLtJ	ENSMUSG00225018418	unclassified gene	Chr5:42926966-42928205 (-)
PWK/PhJ	ENSLUMG00010022993	unclassified gene	Chr5:30401822-30403060 (-)
SPRET/EiJ	ENSMSPG00010038196	unclassified gene	Chr5:31617167-31618411 (-)
WSB/EiJ	ENSIUOG00005018842	unclassified gene	Chr5:33199089-33200328 (-)

Homology

• Gene Tree
  4930442P19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 4930442P19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103608 (Evidence)
• NCBI Gene
  321013

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103608	Ensembl Gene Model | MGI Sequence Detail	1240	C57BL/6J
transcript	AK161360	GenBank | ENA | DDBJ | MGI Sequence Detail	1242	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 19

  Phenotypes 13
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 4930442P19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50690	Chr5:35549250-35549262 (-)	0 bp