1700006J14Rik Gene Detail

Summary

• Symbol
  1700006J14Rik
• Name
  RIKEN cDNA 1700006J14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2447818
  NCBI Gene: 321010
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120163998-120220241 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 67.94 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1634 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447818	lncRNA gene	Chr10:120163998-120220241 (+)
129S1/SvImJ	ENSMUSG00200026851	lncRNA gene	Chr10:116551192-116571368 (+)
129S1/SvImJ	ENSMUSG00200025457	protein coding gene	Chr10:116551041-116579176 (+)
A/J	ENSMUSG00195022598	lncRNA gene	Chr10:116955681-116975857 (+)
A/J	ENSMUSG00195021477	protein coding gene	Chr10:116955530-116983401 (+)
AKR/J	ENSMUSG00220014874	lncRNA gene	Chr10:116594358-116614498 (+)
AKR/J	ENSMUSG00220014537	protein coding gene	Chr10:116594207-116622312 (+)
BALB/cJ	ENSMUSG00180016754	protein coding gene	Chr10:116968069-116995939 (+)
BALB/cJ	ENSMUSG00180017130	lncRNA gene	Chr10:116968220-116988399 (+)
C3H/HeJ	ENSMUSG00175023700	protein coding gene	Chr10:116971190-116999089 (+)
C3H/HeJ	ENSMUSG00175026645	lncRNA gene	Chr10:116971341-116991518 (+)
C57BL/6NJ	ENSMUSG00215016838	lncRNA gene	Chr10:116610165-116630342 (+)
C57BL/6NJ	ENSMUSG00215008559	protein coding gene	Chr10:116610014-116637909 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013280	unclassified non-coding RNA gene	Chr10:112987684-113007220 (+)
CAST/EiJ	ENSTCUG00005033657	lncRNA gene	Chr10:115934283-115954295 (+)
CBA/J	ENSMUSG00210021344	lncRNA gene	Chr10:116808120-116828294 (+)
CBA/J	ENSMUSG00210020894	protein coding gene	Chr10:116807969-116835863 (+)
DBA/2J	ENSMUSG00185008571	protein coding gene	Chr10:116919453-116947564 (+)
DBA/2J	ENSMUSG00185009648	lncRNA gene	Chr10:116919604-116939779 (+)
FVB/NJ	ENSMUSG00205031355	lncRNA gene	Chr10:116216238-116236415 (+)
FVB/NJ	ENSMUSG00205023244	protein coding gene	Chr10:116216087-116243978 (+)
JF1/MsJ	ENSUMUG00000026032	lncRNA gene	Chr10:118202000-118222028 (+)
LP/J	ENSMUSG00230024910	protein coding gene	Chr10:118879360-118907487 (+)
LP/J	ENSMUSG00230025479	lncRNA gene	Chr10:118879511-118899669 (+)
NOD/ShiLtJ	ENSMUSG00190018174	lncRNA gene	Chr10:117019117-117039293 (+)
NOD/ShiLtJ	ENSMUSG00190017765	protein coding gene	Chr10:117018966-117047071 (+)
NZO/HlLtJ	ENSMUSG00225036572	protein coding gene	Chr10:123128954-123157086 (+)
NZO/HlLtJ	ENSMUSG00225038341	lncRNA gene	Chr10:123129105-123149283 (+)
PWK/PhJ	ENSLUMG00010013614	lncRNA gene	Chr10:116596268-116616332 (+)
SPRET/EiJ	ENSMSPG00010016354	lncRNA gene	Chr10:118514737-118534784 (+)
WSB/EiJ	ENSIUOG00005014427	lncRNA gene	Chr10:116654161-116674154 (+)

Homology

• Gene Tree
  1700006J14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700006J14Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  604
• Tissues
  4
• cDNA Data
  18
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000034764 (Evidence)
• NCBI Gene
  321010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034764	Ensembl Gene Model | MGI Sequence Detail	56244	C57BL/6J
transcript	ENSMUST00000160091	Ensembl | MGI Sequence Detail	2672	Not Applicable
polypeptide	Q9CPR3	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 19

  cDNA 18

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107

TSS for 1700006J14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95997	Chr10:120216621-120216623 (+)	52,624 bp