BC030500 Gene Detail

Summary

• Symbol
  BC030500
• Name
  cDNA sequence BC030500
• Synonyms
  MGC:40983

• Feature Type
  protein coding gene
• IDs
  MGI:2447770
  NCBI Gene: 234290
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:59364789-59367332 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2447770	protein coding gene	Chr8:59364789-59367332 (+)
129S1/SvImJ	ENSMUSG00200007205	protein coding gene	Chr8:54155420-54157962 (+)
A/J	ENSMUSG00195011973	protein coding gene	Chr8:54547812-54550353 (+)
AKR/J	ENSMUSG00220005525	protein coding gene	Chr8:54345205-54347733 (+)
BALB/cJ	ENSMUSG00180014112	protein coding gene	Chr8:54161133-54163679 (+)
C3H/HeJ	ENSMUSG00175007389	protein coding gene	Chr8:54338033-54340579 (+)
C57BL/6NJ	ENSMUSG00215007579	protein coding gene	Chr8:54177603-54180146 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031070	protein coding gene	Chr8:51683538-51686073 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210009072	protein coding gene	Chr8:54239016-54241557 (+)
DBA/2J	ENSMUSG00185008006	protein coding gene	Chr8:60320420-60322967 (+)
FVB/NJ	ENSMUSG00205011383	protein coding gene	Chr8:53578946-53581492 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230005820	protein coding gene	Chr8:63979259-63981805 (+)
NOD/ShiLtJ	ENSMUSG00190009447	protein coding gene	Chr8:54148067-54150608 (+)
NZO/HlLtJ	ENSMUSG00225030281	protein coding gene	Chr8:67415137-67417683 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  BC030500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving BC030500
• Incidental Mutations
  APF
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  4
• UniProt
  3
• CCDS
  CCDS40345.1

• Ensembl
  ENSMUSG00000049946 (Evidence)
• NCBI Gene
  234290

Representative Sequences			Length	Strain/Species
genomic	234290	NCBI Gene Model | MGI Sequence Detail	2544	C57BL/6J
transcript	NM_173411	RefSeq | MGI Sequence Detail	1605	C57BL/6
polypeptide	NP_775587	RefSeq | MGI Sequence Detail	123	C57BL/6

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Phenotypes 3
• Earliest
  J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC030500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77441	Chr8:59366730-59366738 (+)	1,945 bp