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Ssxa1 Gene Detail
Summary
  • Symbol
    Ssxa1
  • Name
    SSX member A1
  • Synonyms
    LOC385338
Location &
Maps
more
  • Sequence Map
    ChrX:20984653-20988327 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 16.61 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446782
 protein coding gene ChrX:20982059-20988327 (+)
129S1/SvImJ ENSMUSG00200015011
 protein coding gene ChrX:15746191-15751563 (+)
A/J ENSMUSG00195007198
 protein coding gene ChrX:15747265-15752637 (+)
AKR/J ENSMUSG00220017681
 protein coding gene ChrX:15242087-15247459 (+)
BALB/cJ ENSMUSG00180022146
 protein coding gene ChrX:15680921-15686293 (+)
C3H/HeJ ENSMUSG00175028177
 protein coding gene ChrX:15721526-15726898 (+)
C57BL/6NJ ENSMUSG00215015510
 protein coding gene ChrX:16325566-16330938 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032976
 protein coding gene ChrX:14335982-14341396 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210020220
 protein coding gene ChrX:15778098-15783470 (+)
DBA/2J ENSMUSG00185030988
 protein coding gene ChrX:22378697-22384069 (+)
FVB/NJ ENSMUSG00205018025
 protein coding gene ChrX:15322327-15327699 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230005680
 protein coding gene ChrX:26954652-26960024 (+)
NOD/ShiLtJ ENSMUSG00190028206
 protein coding gene ChrX:15724586-15729958 (+)
NZO/HlLtJ ENSMUSG00225041188
 protein coding gene ChrX:32187867-32193239 (+)
PWK/PhJ no annotation
SPRET/EiJ ENSMSPG00010010257
 protein coding gene ChrX:16877631-16881269 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SSX1, SSX family member 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SSX1, SSX family member 1
  • Synonyms
    CT5.1, SPGFX5, SSRC
  • Links
    NCBI Gene ID: 6756
    UniProt: Q16384

  • Chr Location
    Xp11.23; chrX:48255392-48267444 (+)  GRCh38
  • Human Ortholog
    SSX2, SSX family member 2
  • Synonyms
    CT5.2, CT5.2A, HD21, HOM-MEL-40, SSX
  • Links
    NCBI Gene ID: 6757
    UniProt: Q16385

  • Chr Location
    Xp11.22; chrX:52696896-52707227 (-)  GRCh38
  • Human Ortholog
    SSX2B, SSX family member 2B
  • Synonyms
    CT5.2, CT5.2b, HOM-MEL-40, SSX
  • Links
    NCBI Gene ID: 727837
    UniProt: Q16385

  • Chr Location
    Xp11.22; chrX:52751132-52790305 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human SSX1 associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    3
  • UniProt
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic 385338 NCBI Gene Model | MGI Sequence Detail 3675 C57BL/6J ±  kb
transcript NM_001205086 RefSeq | MGI Sequence Detail 493 BALB/c  
polypeptide B1AUS7 UniProt | EBI | MGI Sequence Detail 101 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:2686378
References
more
  • Summaries
    All 15
    Gene Ontology 5
    Phenotypes 1
  • Earliest
    J:86525 Chen YT, et al., Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Genomics. 2003 Dec;82(6):628-36
  • Latest
    J:383314 Ichinokawa M, et al., Sequence confirmation and characterization of the mouse Ssxa gene: Ssxa protein is cleaved and the N-terminal cleaved fragment translocates into the nucleus. Int J Mol Med. 2011 Nov;28(5):705-10
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory