A630023P12Rik Gene Detail

Summary

• Symbol
  A630023P12Rik
• Name
  RIKEN cDNA A630023P12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445162
  NCBI Gene: 231603
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:110662789-110673846 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  471 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445162	lncRNA gene	Chr5:110615121-110684763 (+)
129S1/SvImJ	ENSMUSG00200023394	lncRNA gene	Chr5:104430309-104441157 (+)
A/J	ENSMUSG00195040009	lncRNA gene	Chr5:103912727-103923557 (+)
AKR/J	ENSMUSG00220052288	lncRNA gene	Chr5:103432838-103443845 (+)
BALB/cJ	ENSMUSG00180048297	lncRNA gene	Chr5:104064486-104075318 (+)
C3H/HeJ	ENSMUSG00175047572	lncRNA gene	Chr5:106050176-106061208 (+)
C57BL/6NJ	ENSMUSG00215037447	lncRNA gene	Chr5:104060161-104071332 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006139	lincRNA gene	Chr5:103428161-103439000 (+)
CAST/EiJ	ENSTCUG00005034575	lncRNA gene	Chr5:103246965-103258062 (+)
CBA/J	ENSMUSG00210046120	lncRNA gene	Chr5:104802337-104813353 (+)
DBA/2J	ENSMUSG00185049871	lncRNA gene	Chr5:107829537-107840430 (+)
FVB/NJ	ENSMUSG00205053343	lncRNA gene	Chr5:103702162-103712992 (+)
JF1/MsJ	ENSUMUG00000017475	lncRNA gene	Chr5:110679308-110690972 (+)
LP/J	ENSMUSG00230049754	lncRNA gene	Chr5:111968778-111979627 (+)
NOD/ShiLtJ	ENSMUSG00190048611	lncRNA gene	Chr5:103738364-103749191 (+)
NZO/HlLtJ	ENSMUSG00225025939	lncRNA gene	Chr5:119590636-119601484 (+)
PWK/PhJ	ENSLUMG00010038960	lncRNA gene	Chr5:102585639-102597341 (+)
SPRET/EiJ	ENSMSPG00010047730	lncRNA gene	Chr5:105835199-105846248 (+)
WSB/EiJ	ENSIUOG00005045639	lncRNA gene	Chr5:106441794-106452674 (+)

Homology

• Gene Tree
  A630023P12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving A630023P12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  69
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000048215 (Evidence)
• NCBI Gene
  231603

Representative Sequences			Length	Strain/Species
genomic	231603	NCBI Gene Model | MGI Sequence Detail	11058	C57BL/6J
transcript	NR_102290	RefSeq | MGI Sequence Detail	646	C57BL/6
polypeptide	Q8C9Q2	UniProt | EBI | MGI Sequence Detail	159	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A630023P12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47897	Chr5:110662723-110662745 (+)	-55 bp
Tssr47898	Chr5:110662751-110662797 (+)	-15 bp
Tssr47899	Chr5:110662800-110662815 (+)	19 bp