D330050G23Rik Gene Detail

Summary

• Symbol
  D330050G23Rik
• Name
  RIKEN cDNA D330050G23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445155
  NCBI Gene: 320975
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:116730633-116743272 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  546 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445155	lncRNA gene	Chr2:116730595-116760226 (+)
129S1/SvImJ	ENSMUSG00200049206	lncRNA gene	Chr2:113665660-113679525 (+)
A/J	ENSMUSG00195026202	lncRNA gene	Chr2:113706865-113721308 (+)
AKR/J	ENSMUSG00220044224	lncRNA gene	Chr2:113587507-113602003 (+)
BALB/cJ	ENSMUSG00180044948	lncRNA gene	Chr2:113512065-113526507 (+)
C3H/HeJ	ENSMUSG00175027712	lncRNA gene	Chr2:113956506-113970355 (+)
C57BL/6NJ	ENSMUSG00215031884	lncRNA gene	Chr2:113645302-113659768 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005459	lincRNA gene	Chr2:109733813-109745868 (+)
CAST/EiJ	ENSTCUG00005017106	lncRNA gene	Chr2:112898506-112912319 (+)
CBA/J	ENSMUSG00210007652	lncRNA gene	Chr2:113797610-113811461 (+)
DBA/2J	ENSMUSG00185048268	lncRNA gene	Chr2:113508897-113523333 (+)
FVB/NJ	ENSMUSG00205044071	lncRNA gene	Chr2:112721857-112736352 (+)
JF1/MsJ	ENSUMUG00000044151	lncRNA gene	Chr2:113366867-113380952 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190046953	lncRNA gene	Chr2:113711409-113725271 (+)
NZO/HlLtJ	ENSMUSG00225004679	lncRNA gene	Chr2:123196865-123211328 (+)
PWK/PhJ	ENSLUMG00010049044	lncRNA gene	Chr2:113287092-113300943 (+)
SPRET/EiJ	ENSMSPG00010044678	lncRNA gene	Chr2:115618072-115632101 (+)
WSB/EiJ	ENSIUOG00005029020	lncRNA gene	Chr2:113452379-113474110 (+)

Homology

• Gene Tree
  D330050G23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving D330050G23Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  2

• Ensembl
  ENSMUSG00000085316 (Evidence)
• NCBI Gene
  320975

Representative Sequences			Length	Strain/Species
genomic	320975	NCBI Gene Model | MGI Sequence Detail	12640	C57BL/6J
transcript	NR_040335	RefSeq | MGI Sequence Detail	1802	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D330050G23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19473	Chr2:116730225-116730232 (+)	-404 bp
Tssr19474	Chr2:116730681-116730697 (+)	56 bp