B530045E10Rik Gene Detail

Summary

• Symbol
  B530045E10Rik
• Name
  RIKEN cDNA B530045E10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445145
  NCBI Gene: 118567817
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:99134954-99258909 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 51.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3759 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445145	lncRNA gene	Chr10:99134750-99259676 (+)
129S1/SvImJ	ENSMUSG00200020346	lncRNA gene	Chr10:95651100-95775225 (+)
A/J	ENSMUSG00195015990	lncRNA gene	Chr10:96077778-96201968 (+)
AKR/J	ENSMUSG00220026362	lncRNA gene	Chr10:95629817-95752827 (+)
BALB/cJ	ENSMUSG00180009785	lncRNA gene	Chr10:96085621-96209761 (+)
C3H/HeJ	ENSMUSG00175005967	lncRNA gene	Chr10:95980475-96110074 (+)
C57BL/6NJ	ENSMUSG00215007634	lncRNA gene	Chr10:95668992-95793199 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004670	lincRNA gene	Chr10:92897083-93014044 (+)
CAST/EiJ	ENSTCUG00005006139	lncRNA gene	Chr10:95352599-95469849 (+)
CBA/J	ENSMUSG00210023094	lncRNA gene	Chr10:95810391-95939965 (+)
DBA/2J	ENSMUSG00185018746	lncRNA gene	Chr10:96027681-96151804 (+)
FVB/NJ	ENSMUSG00205004163	lncRNA gene	Chr10:95727146-95849268 (+)
JF1/MsJ	ENSUMUG00000026919	lncRNA gene	Chr10:97436515-97560673 (+)
LP/J	ENSMUSG00230023003	lncRNA gene	Chr10:97946281-98070400 (+)
NOD/ShiLtJ	ENSMUSG00190027046	lncRNA gene	Chr10:96063837-96187948 (+)
NZO/HlLtJ	ENSMUSG00225041012	lncRNA gene	Chr10:102177217-102301372 (+)
PWK/PhJ	ENSLUMG00010005887	lncRNA gene	Chr10:95723365-95840318 (+)
SPRET/EiJ	ENSMSPG00010010897	lncRNA gene	Chr10:97442556-97560107 (+)
WSB/EiJ	ENSIUOG00005013226	lncRNA gene	Chr10:95764077-95887403 (+)

Homology

• Gene Tree
  B530045E10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving B530045E10Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000044633 (Evidence)
• NCBI Gene
  118567817

Representative Sequences			Length	Strain/Species
genomic	118567817	NCBI Gene Model | MGI Sequence Detail	123956	C57BL/6J
transcript	NR_190049	RefSeq | MGI Sequence Detail	2934	C57BL/6
polypeptide	Q8BFW8	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for B530045E10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95549	Chr10:99134951-99134955 (+)	-1 bp
Tssr95550	Chr10:99142474-99142479 (+)	7,523 bp