A730013G03Rik Gene Detail

Summary

• Symbol
  A730013G03Rik
• Name
  RIKEN cDNA A730013G03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445118
  NCBI Gene: 320952
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:192515427-192517521 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 97.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445118	lncRNA gene	Chr1:192515426-192517522 (-)
129S1/SvImJ	ENSMUSG00200004902	unclassified gene	Chr1:190288824-190290920 (-)
A/J	ENSMUSG00195009045	unclassified gene	Chr1:189862820-189864916 (-)
AKR/J	ENSMUSG00220005366	unclassified gene	Chr1:189110355-189112451 (-)
BALB/cJ	ENSMUSG00180020850	unclassified gene	Chr1:189932359-189934455 (-)
C3H/HeJ	ENSMUSG00175022917	unclassified gene	Chr1:190116082-190118178 (-)
C57BL/6NJ	ENSMUSG00215027000	unclassified gene	Chr1:189350995-189353091 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000576	unclassified gene	Chr1:182562248-182564361 (-)
CAST/EiJ	ENSTCUG00005002207	unclassified gene	Chr1:187901781-187903867 (-)
CBA/J	ENSMUSG00210003772	unclassified gene	Chr1:189807277-189809373 (-)
DBA/2J	ENSMUSG00185010863	unclassified gene	Chr1:194407953-194410049 (-)
FVB/NJ	ENSMUSG00205004938	unclassified gene	Chr1:188776202-188778298 (-)
JF1/MsJ	ENSUMUG00000009675	unclassified gene	Chr1:193361904-193363992 (-)
LP/J	ENSMUSG00230002357	unclassified gene	Chr1:193926999-193929095 (-)
NOD/ShiLtJ	ENSMUSG00190034534	unclassified gene	Chr1:189753996-189756092 (-)
NZO/HlLtJ	ENSMUSG00225016849	unclassified gene	Chr1:197678781-197680877 (-)
PWK/PhJ	ENSLUMG00010006781	unclassified gene	Chr1:188616091-188618187 (-)
SPRET/EiJ	ENSMSPG00010026061	unclassified gene	Chr1:192126823-192128915 (-)
WSB/EiJ	ENSIUOG00005004887	unclassified gene	Chr1:189102336-189104432 (-)

Homology

• Gene Tree
  A730013G03Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000047384 (Evidence)
• NCBI Gene
  320952

Representative Sequences			Length	Strain/Species
genomic	320952	NCBI Gene Model | MGI Sequence Detail	2095	C57BL/6J
transcript	NR_155503	RefSeq | MGI Sequence Detail	2095	Not Specified
polypeptide	Q8BHJ4	UniProt | EBI | MGI Sequence Detail	202	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A730013G03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15829	Chr1:192516865-192516866 (-)	655 bp