A730061H03Rik Gene Detail

Summary

• Symbol
  A730061H03Rik
• Name
  RIKEN cDNA A730061H03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445099
  NCBI Gene: 320942
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:55796554-55797865 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 28.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445099	lncRNA gene	Chr14:55796554-55797865 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021348	protein coding gene	Chr14:49593274-49593738 (-)
A/J	MGP_AJ_G0021307	protein coding gene	Chr14:48606098-48606562 (-)
AKR/J	MGP_AKRJ_G0021283	protein coding gene	Chr14:50352441-50352905 (-)
BALB/cJ	MGP_BALBcJ_G0021311	protein coding gene	Chr14:48552791-48553255 (-)
C3H/HeJ	MGP_C3HHeJ_G0021091	protein coding gene	Chr14:50039043-50039507 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0021749	protein coding gene	Chr14:52087275-52087739 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019296	protein coding gene	Chr14:46979362-46979826 (-)
CAST/EiJ	MGP_CASTEiJ_G0020610	protein coding gene	Chr14:46302490-46302956 (-)
CBA/J	MGP_CBAJ_G0021058	protein coding gene	Chr14:53644789-53645253 (-)
DBA/2J	MGP_DBA2J_G0021179	protein coding gene	Chr14:48331986-48332450 (-)
FVB/NJ	MGP_FVBNJ_G0021161	protein coding gene	Chr14:47780984-47781448 (-)
LP/J	MGP_LPJ_G0021253	protein coding gene	Chr14:50639489-50639953 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021185	protein coding gene	Chr14:53004305-53004769 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021776	protein coding gene	Chr14:49539886-49540350 (-)
PWK/PhJ	MGP_PWKPhJ_G0020357	protein coding gene	Chr14:44862308-44862772 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0020185	protein coding gene	Chr14:45537755-45538218 (-)
WSB/EiJ	MGP_WSBEiJ_G0020663	protein coding gene	Chr14:49823302-49823766 (-)

Homology

• Gene Tree
  A730061H03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving A730061H03Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000053588 (Evidence)
• NCBI Gene
  320942

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053588	Ensembl Gene Model | MGI Sequence Detail	1312	C57BL/6J
transcript	ENSMUST00000238215	Ensembl | MGI Sequence Detail	1312	Not Applicable
polypeptide	Q8BGD2	UniProt | EBI | MGI Sequence Detail	154	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A730061H03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128831	Chr14:55797797-55797852 (-)	40 bp
Tssr128830	Chr14:55797440-55797465 (-)	412 bp
Tssr128829	Chr14:55797420-55797437 (-)	436 bp