9130227L01Rik Gene Detail

Summary

• Symbol
  9130227L01Rik
• Name
  RIKEN cDNA 9130227L01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445084
  NCBI Gene: 329159
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:55970400-56011257 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 28.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1185 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445084	lncRNA gene	Chr1:55955317-56011928 (+)
129S1/SvImJ	ENSMUSG00200018697	lncRNA gene	Chr1:53445716-53486820 (+)
A/J	ENSMUSG00195030093	lncRNA gene	Chr1:53002553-53043655 (+)
AKR/J	ENSMUSG00220042531	lncRNA gene	Chr1:53077717-53119919 (+)
BALB/cJ	ENSMUSG00180014418	lncRNA gene	Chr1:53250460-53292658 (+)
C3H/HeJ	ENSMUSG00175001158	lncRNA gene	Chr1:53383833-53424941 (+)
C57BL/6NJ	ENSMUSG00215036665	lncRNA gene	Chr1:53302719-53343822 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004375	lincRNA gene	Chr1:49792826-49833903 (+)
CAST/EiJ	ENSTCUG00005014141	lncRNA gene	Chr1:53218148-53261333 (+)
CBA/J	ENSMUSG00210054101	lncRNA gene	Chr1:53064424-53105519 (+)
DBA/2J	ENSMUSG00185055040	lncRNA gene	Chr1:54183970-54225078 (+)
FVB/NJ	ENSMUSG00205025234	lncRNA gene	Chr1:53030753-53071862 (+)
JF1/MsJ	ENSUMUG00000046220	lncRNA gene	Chr1:53150468-53192814 (+)
LP/J	ENSMUSG00230029329	lncRNA gene	Chr1:54192841-54233929 (+)
NOD/ShiLtJ	ENSMUSG00190044219	lncRNA gene	Chr1:53222220-53264426 (+)
NZO/HlLtJ	ENSMUSG00225009763	lncRNA gene	Chr1:57384610-57425700 (+)
PWK/PhJ	ENSLUMG00010025998	lncRNA gene	Chr1:52706859-52749309 (+)
SPRET/EiJ	ENSMSPG00010026880	lncRNA gene	Chr1:54503150-54551355 (+)
WSB/EiJ	ENSIUOG00005021037	lncRNA gene	Chr1:52868982-52911215 (+)

Homology

• Gene Tree
  9130227L01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9130227L01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000099950 (Evidence)
• NCBI Gene
  329159

Representative Sequences			Length	Strain/Species
genomic	329159	NCBI Gene Model | MGI Sequence Detail	40858	C57BL/6J
transcript	NR_045837	RefSeq | MGI Sequence Detail	1906	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573