A230004M16Rik Gene Detail

Summary

• Symbol
  A230004M16Rik
• Name
  RIKEN cDNA A230004M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445050
  NCBI Gene: 102637814
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:41601171-41859629 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 24.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  931 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445050	lncRNA gene	Chr11:41601169-41863944 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015166	unclassified non-coding RNA gene	Chr11:40376924-40646368 (+)
A/J	MGP_AJ_G0015140	unclassified non-coding RNA gene	Chr11:38844622-39101473 (+)
AKR/J	MGP_AKRJ_G0015103	unclassified non-coding RNA gene	Chr11:39963627-40238328 (+)
BALB/cJ	MGP_BALBcJ_G0015102	unclassified non-coding RNA gene	Chr11:39036392-39288718 (+)
C3H/HeJ	MGP_C3HHeJ_G0014926	unclassified non-coding RNA gene	Chr11:39998171-40275184 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015559	unclassified non-coding RNA gene	Chr11:41635947-41922681 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013303	unclassified non-coding RNA gene	Chr11:37012660-37263546 (+)
CAST/EiJ	MGP_CASTEiJ_G0014479	unclassified non-coding RNA gene	Chr11:40010086-40296161 (+)
CBA/J	MGP_CBAJ_G0014905	unclassified non-coding RNA gene	Chr11:43525120-43813013 (+)
DBA/2J	MGP_DBA2J_G0014998	unclassified non-coding RNA gene	Chr11:38621000-38871268 (+)
FVB/NJ	MGP_FVBNJ_G0015010	unclassified non-coding RNA gene	Chr11:38369735-38629070 (+)
LP/J	MGP_LPJ_G0015079	unclassified non-coding RNA gene	Chr11:40603691-40880495 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015036	unclassified non-coding RNA gene	Chr11:44978833-45312680 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015598	unclassified non-coding RNA gene	Chr11:40088650-40355070 (+)
PWK/PhJ	MGP_PWKPhJ_G0014271	unclassified non-coding RNA gene	Chr11:38637566-38895261 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014058	unclassified non-coding RNA gene	Chr11:39885923-40146100 (+)
WSB/EiJ	MGP_WSBEiJ_G0014582	unclassified non-coding RNA gene	Chr11:39769277-40036224 (+)

Homology

• Gene Tree
  A230004M16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  2 involving A230004M16Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000087306 (Evidence)
• NCBI Gene
  102637814

Representative Sequences			Length	Strain/Species
genomic	102637814	NCBI Gene Model | MGI Sequence Detail	258459	C57BL/6J
transcript	AK038406	GenBank | ENA | DDBJ | MGI Sequence Detail	4470	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573