A230004M16Rik Gene Detail

Summary

• Symbol
  A230004M16Rik
• Name
  RIKEN cDNA A230004M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445050
  NCBI Gene: 102637814
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:41601171-41859629 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 24.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7660 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445050	lncRNA gene	Chr11:41601169-41863944 (+)
129S1/SvImJ	ENSMUSG00200007333	lncRNA gene	Chr11:38651108-38917103 (+)
A/J	ENSMUSG00195007359	lncRNA gene	Chr11:38603198-38869209 (+)
AKR/J	ENSMUSG00220003427	lncRNA gene	Chr11:38792183-39070982 (+)
BALB/cJ	ENSMUSG00180001797	lncRNA gene	Chr11:38595432-38861429 (+)
C3H/HeJ	ENSMUSG00175003872	lncRNA gene	Chr11:38596966-38862982 (+)
C57BL/6NJ	ENSMUSG00215010774	lncRNA gene	Chr11:38539656-38802854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013303	unclassified non-coding RNA gene	Chr11:37012660-37263546 (+)
CAST/EiJ	ENSTCUG00005013270	lncRNA gene	Chr11:38325819-38587351 (+)
CBA/J	ENSMUSG00210006883	lncRNA gene	Chr11:38486305-38752308 (+)
DBA/2J	ENSMUSG00185010553	lncRNA gene	Chr11:38654537-38910557 (+)
FVB/NJ	ENSMUSG00205011967	lncRNA gene	Chr11:38635396-38891407 (+)
JF1/MsJ	ENSUMUG00000005431	lncRNA gene	Chr11:38875450-39121825 (+)
LP/J	ENSMUSG00230004194	lncRNA gene	Chr11:39815522-40081511 (+)
NOD/ShiLtJ	ENSMUSG00190007492	lncRNA gene	Chr11:38718800-38974791 (+)
NZO/HlLtJ	ENSMUSG00225036462	lncRNA gene	Chr11:41759281-42015264 (+)
PWK/PhJ	ENSLUMG00010007365	lncRNA gene	Chr11:38469458-38721361 (+)
SPRET/EiJ	ENSMSPG00010002321	lncRNA gene	Chr11:39043383-39314397 (+)
WSB/EiJ	ENSIUOG00005002155	lncRNA gene	Chr11:38475474-38728288 (+)

Homology

• Gene Tree
  A230004M16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  2 involving A230004M16Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000087306 (Evidence)
• NCBI Gene
  102637814

Representative Sequences			Length	Strain/Species
genomic	102637814	NCBI Gene Model | MGI Sequence Detail	258459	C57BL/6J
transcript	AK038406	GenBank | ENA | DDBJ | MGI Sequence Detail	4470	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573