B430105G09Rik Gene Detail

Summary

• Symbol
  B430105G09Rik
• Name
  RIKEN cDNA B430105G09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2445016
  NCBI Gene: 320907
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:59801215-59803420 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2445016	lncRNA gene	Chr1:59801215-59803420 (-)
129S1/SvImJ	ENSMUSG00200018639	lncRNA gene	Chr1:57300299-57301632 (-)
A/J	ENSMUSG00195031085	lncRNA gene	Chr1:56839558-56840891 (-)
AKR/J	ENSMUSG00220040342	lncRNA gene	Chr1:56924477-56925819 (-)
BALB/cJ	ENSMUSG00180014493	lncRNA gene	Chr1:57074519-57075861 (-)
C3H/HeJ	ENSMUSG00175001209	lncRNA gene	Chr1:57216972-57218305 (-)
C57BL/6NJ	ENSMUSG00215031769	lncRNA gene	Chr1:57148833-57150166 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013647	lncRNA gene	Chr1:56990531-56991850 (-)
CBA/J	ENSMUSG00210054071	lncRNA gene	Chr1:56901948-56903281 (-)
DBA/2J	ENSMUSG00185055360	lncRNA gene	Chr1:58021664-58022997 (-)
FVB/NJ	ENSMUSG00205024389	lncRNA gene	Chr1:56862792-56864125 (-)
JF1/MsJ	ENSUMUG00000045644	lncRNA gene	Chr1:56985994-56987331 (-)
LP/J	ENSMUSG00230030358	lncRNA gene	Chr1:58022200-58023533 (-)
NOD/ShiLtJ	ENSMUSG00190039828	lncRNA gene	Chr1:57055574-57056915 (-)
NZO/HlLtJ	ENSMUSG00225009248	lncRNA gene	Chr1:61230666-61232009 (-)
PWK/PhJ	ENSLUMG00010025480	lncRNA gene	Chr1:56495620-56496957 (-)
SPRET/EiJ	ENSMSPG00010027975	lncRNA gene	Chr1:58433409-58434745 (-)
WSB/EiJ	ENSIUOG00005020574	lncRNA gene	Chr1:56688245-56689588 (-)

Homology

• Gene Tree
  B430105G09Rik
  

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000119961 (Evidence)
• NCBI Gene
  320907

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119961	Ensembl Gene Model | MGI Sequence Detail	2206	C57BL/6J
transcript	ENSMUST00000240823	Ensembl | MGI Sequence Detail	1344	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B430105G09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11840	Chr1:59803988-59803997 (-)	-573 bp
Tssr11839	Chr1:59802495-59802515 (-)	915 bp
Tssr11838	Chr1:59802463-59802476 (-)	950 bp