C330020E22Rik Gene Detail

Summary

• Symbol
  C330020E22Rik
• Name
  RIKEN cDNA C330020E22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444986
  NCBI Gene: 320896
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:129276512-129292879 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  726 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444986	lncRNA gene	Chr4:129269096-129299326 (+)
129S1/SvImJ	ENSMUSG00200021494	lncRNA gene	Chr4:122711637-122724164 (+)
A/J	ENSMUSG00195046351	lncRNA gene	Chr4:124053369-124065942 (+)
AKR/J	ENSMUSG00220048458	lncRNA gene	Chr4:123044875-123057447 (+)
BALB/cJ	ENSMUSG00180049869	lncRNA gene	Chr4:121687057-121699629 (+)
C3H/HeJ	ENSMUSG00175047911	lncRNA gene	Chr4:122699669-122712239 (+)
C57BL/6NJ	ENSMUSG00215052462	lncRNA gene	Chr4:124200727-124213300 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048593	lncRNA gene	Chr4:123581201-123593467 (+)
CBA/J	ENSMUSG00210054003	lncRNA gene	Chr4:122328689-122341261 (+)
DBA/2J	ENSMUSG00185052820	lncRNA gene	Chr4:123861037-123873608 (+)
FVB/NJ	ENSMUSG00205049351	lncRNA gene	Chr4:122087746-122100357 (+)
JF1/MsJ	ENSUMUG00000045741	lncRNA gene	Chr4:124503152-124515695 (+)
LP/J	ENSMUSG00230039035	lncRNA gene	Chr4:127649096-127661623 (+)
NOD/ShiLtJ	ENSMUSG00190049380	lncRNA gene	Chr4:122093034-122105630 (+)
NZO/HlLtJ	ENSMUSG00225026754	lncRNA gene	Chr4:133571972-133584546 (+)
PWK/PhJ	ENSLUMG00010050578	lncRNA gene	Chr4:121544426-121556738 (+)
SPRET/EiJ	ENSMSPG00010045190	lncRNA gene	Chr4:123612415-123624624 (+)
WSB/EiJ	ENSIUOG00005043509	lncRNA gene	Chr4:121947239-121959846 (+)

Homology

• Gene Tree
  C330020E22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving C330020E22Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000120913 (Evidence)
• NCBI Gene
  320896

Representative Sequences			Length	Strain/Species
genomic	320896	NCBI Gene Model | MGI Sequence Detail	16368	C57BL/6J
transcript	NR_151530	RefSeq | MGI Sequence Detail	5263	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for C330020E22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39145	Chr4:129275208-129275231 (+)	-1,292 bp
Tssr39146	Chr4:129276478-129276499 (+)	-23 bp
Tssr39147	Chr4:129276514-129276560 (+)	25 bp