Gjd2os Gene Detail

Summary

• Symbol
  Gjd2os
• Name
  gap junction protein, delta 2 opposite strand
• Synonyms
  A530058N18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2444858
  NCBI Gene: 320846
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:113844046-113862773 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 57.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444858	lncRNA gene	Chr2:113844044-113905863 (+)
129S1/SvImJ	ENSMUSG00200008471	lncRNA gene	Chr2:110731991-110750681 (+)
A/J	ENSMUSG00195031975	lncRNA gene	Chr2:110793751-110812441 (+)
AKR/J	ENSMUSG00220005340	lncRNA gene	Chr2:110689215-110707923 (+)
BALB/cJ	ENSMUSG00180034318	lncRNA gene	Chr2:110588977-110607668 (+)
C3H/HeJ	ENSMUSG00175032676	lncRNA gene	Chr2:111037985-111056677 (+)
C57BL/6NJ	ENSMUSG00215029232	lncRNA gene	Chr2:110745953-110764643 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013588	unclassified non-coding RNA gene	Chr2:106914851-106933953 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013587	unclassified non-coding RNA gene	Chr2:106914812-106972864 (+)
CAST/EiJ	ENSTCUG00005005880	lncRNA gene	Chr2:109972850-109991531 (+)
CBA/J	ENSMUSG00210039637	lncRNA gene	Chr2:110862896-110881586 (+)
DBA/2J	ENSMUSG00185039920	lncRNA gene	Chr2:110585292-110603982 (+)
FVB/NJ	ENSMUSG00205020854	lncRNA gene	Chr2:109843845-109862551 (+)
JF1/MsJ	ENSUMUG00000003735	lncRNA gene	Chr2:110429240-110447872 (+)
LP/J	ENSMUSG00230006120	lncRNA gene	Chr2:112394093-112412783 (+)
NOD/ShiLtJ	ENSMUSG00190016275	lncRNA gene	Chr2:110823784-110842490 (+)
NZO/HlLtJ	ENSMUSG00225013104	lncRNA gene	Chr2:120281458-120300148 (+)
PWK/PhJ	ENSLUMG00010003374	lncRNA gene	Chr2:110347097-110365725 (+)
SPRET/EiJ	ENSMSPG00010045749	lncRNA gene	Chr2:112598784-112617484 (+)
WSB/EiJ	ENSIUOG00005033495	lncRNA gene	Chr2:110516516-110535204 (+)

Homology

• Human Ortholog
  GJD2-DT, GJD2 divergent transcript

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  GJD2-DT, GJD2 divergent transcript
  
• Links
  HGNC:55560

  NCBI Gene ID: 101928174

  
  
• Chr Location
  chr15:34755062-34813505 (+)  GRCh38

---

• MGI Vertebrate Homology
  Gjd2os stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: GJD2-DT

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gjd2os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000087694 (Evidence), ENSMUSG00000092201 (Evidence)
• NCBI Gene
  320846

Representative Sequences			Length	Strain/Species
genomic	320846	NCBI Gene Model | MGI Sequence Detail	18728	C57BL/6J
transcript	NR_028423	RefSeq | MGI Sequence Detail	1572	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:7567982

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Gjd2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr599	Chr2:113844173-113844208 (+)	145 bp