A230056P14Rik Gene Detail

Summary

• Symbol
  A230056P14Rik
• Name
  RIKEN cDNA A230056P14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444856
  NCBI Gene: 320845
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:55612279-55629844 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444856	lncRNA gene	Chr7:55612259-55630616 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015669	unclassified non-coding RNA gene	Chr7:56768513-56786863 (+)
A/J	MGP_AJ_G0015648	unclassified non-coding RNA gene	Chr7:55915385-55935242 (+)
AKR/J	MGP_AKRJ_G0015611	unclassified non-coding RNA gene	Chr7:57224502-57243651 (+)
BALB/cJ	MGP_BALBcJ_G0015609	unclassified non-coding RNA gene	Chr7:55524413-55545660 (+)
C3H/HeJ	MGP_C3HHeJ_G0015431	unclassified non-coding RNA gene	Chr7:57561757-57580063 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016063	unclassified non-coding RNA gene	Chr7:59340612-59358888 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013793	unclassified non-coding RNA gene	Chr7:58583199-58602247 (+)
CAST/EiJ	MGP_CASTEiJ_G0014986	unclassified non-coding RNA gene	Chr7:48772289-48791926 (+)
CBA/J	MGP_CBAJ_G0015412	unclassified non-coding RNA gene	Chr7:61385520-61406350 (+)
DBA/2J	MGP_DBA2J_G0015507	unclassified non-coding RNA gene	Chr7:54939927-54958204 (+)
FVB/NJ	MGP_FVBNJ_G0015514	unclassified non-coding RNA gene	Chr7:54887908-54906420 (+)
LP/J	MGP_LPJ_G0015587	unclassified non-coding RNA gene	Chr7:57828943-57847098 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015536	unclassified non-coding RNA gene	Chr7:60907713-60927242 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016105	unclassified non-coding RNA gene	Chr7:56206724-56225838 (+)
PWK/PhJ	MGP_PWKPhJ_G0014768	unclassified non-coding RNA gene	Chr7:48195857-48214965 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014557	unclassified non-coding RNA gene	Chr7:44257332-44273989 (+)
WSB/EiJ	MGP_WSBEiJ_G0015091	unclassified non-coding RNA gene	Chr7:56843101-56863275 (+)

Homology

• Gene Tree
  A230056P14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087178 (Evidence)
• NCBI Gene
  320845

Representative Sequences			Length	Strain/Species
genomic	320845	NCBI Gene Model | MGI Sequence Detail	17566	C57BL/6J
transcript	NR_015495	RefSeq | MGI Sequence Detail	1405	C57BL/6
polypeptide	Q3USL2	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3801779

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A230056P14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66928	Chr7:55612268-55612300 (+)	5 bp