A230056P14Rik Gene Detail

Summary

• Symbol
  A230056P14Rik
• Name
  RIKEN cDNA A230056P14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444856
  NCBI Gene: 320845
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:55612279-55629844 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  622 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444856	lncRNA gene	Chr7:55611942-55635759 (+)
129S1/SvImJ	ENSMUSG00200009533	lncRNA gene	Chr7:43092669-43111125 (+)
A/J	ENSMUSG00195011462	lncRNA gene	Chr7:47254669-47273115 (+)
AKR/J	ENSMUSG00220011518	lncRNA gene	Chr7:41563221-41581669 (+)
BALB/cJ	ENSMUSG00180010861	lncRNA gene	Chr7:44118381-44136828 (+)
C3H/HeJ	ENSMUSG00175003686	lncRNA gene	Chr7:44611841-44630295 (+)
C57BL/6NJ	ENSMUSG00215002199	lncRNA gene	Chr7:43934082-43952439 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013793	unclassified non-coding RNA gene	Chr7:58583199-58602247 (+)
CAST/EiJ	ENSTCUG00005023766	lncRNA gene	Chr7:47481355-47500120 (+)
CBA/J	ENSMUSG00210017529	lncRNA gene	Chr7:44993540-45011994 (+)
DBA/2J	ENSMUSG00185028792	lncRNA gene	Chr7:48884886-48903328 (+)
FVB/NJ	ENSMUSG00205001666	lncRNA gene	Chr7:44691973-44710440 (+)
JF1/MsJ	ENSUMUG00000014001	lncRNA gene	Chr7:53690919-53709700 (+)
LP/J	ENSMUSG00230006588	lncRNA gene	Chr7:54432081-54450526 (+)
NOD/ShiLtJ	ENSMUSG00190003843	lncRNA gene	Chr7:45024596-45043047 (+)
NZO/HlLtJ	ENSMUSG00225011215	lncRNA gene	Chr7:52611016-52629482 (+)
PWK/PhJ	ENSLUMG00010002276	lncRNA gene	Chr7:43625793-43644613 (+)
SPRET/EiJ	ENSMSPG00010001550	lncRNA gene	Chr7:43610684-43626301 (+)
WSB/EiJ	ENSIUOG00005005517	lncRNA gene	Chr7:45310746-45329207 (+)

Homology

• Gene Tree
  A230056P14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087178 (Evidence)
• NCBI Gene
  320845

Representative Sequences			Length	Strain/Species
genomic	320845	NCBI Gene Model | MGI Sequence Detail	17566	C57BL/6J
transcript	NR_015495	RefSeq | MGI Sequence Detail	1405	C57BL/6
polypeptide	Q3USL2	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3801779

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A230056P14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66928	Chr7:55612268-55612300 (+)	5 bp