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Samd5 Gene Detail
Summary
  • Symbol
    Samd5
  • Name
    sterile alpha motif domain containing 5
  • Synonyms
    E130306M17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444815
    NCBI Gene: 320825
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:9400709-9550952 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 3.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4791 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444815
 protein coding gene Chr10:9138205-9551670 (-)
129S1/SvImJ ENSMUSG00200009179
 protein coding gene Chr10:6510546-6563270 (-)
A/J ENSMUSG00195009828
 protein coding gene Chr10:6397510-6453142 (-)
AKR/J ENSMUSG00220007292
 protein coding gene Chr10:6520670-6576295 (-)
BALB/cJ ENSMUSG00180021702
 protein coding gene Chr10:6559454-6615095 (-)
C3H/HeJ ENSMUSG00175011874
 protein coding gene Chr10:6550252-6605893 (-)
C57BL/6NJ ENSMUSG00215004716
 protein coding gene Chr10:6442081-6494652 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015109
 protein coding gene Chr10:6120334-6168928 (-)
CAST/EiJ ENSTCUG00005017479
 protein coding gene Chr10:6527356-6579655 (-)
CBA/J ENSMUSG00210012288
 protein coding gene Chr10:6495932-6551572 (-)
DBA/2J ENSMUSG00185009731
 protein coding gene Chr10:6544475-6597188 (-)
FVB/NJ ENSMUSG00205007772
 protein coding gene Chr10:6510722-6563268 (-)
JF1/MsJ ENSUMUG00000029858
 protein coding gene Chr10:6595211-6656510 (-)
LP/J ENSMUSG00230013772
 protein coding gene Chr10:8159280-8214922 (-)
NOD/ShiLtJ ENSMUSG00190021626
 protein coding gene Chr10:6502343-6560569 (-)
NZO/HlLtJ ENSMUSG00225015391
 protein coding gene Chr10:12693263-12745985 (-)
PWK/PhJ ENSLUMG00010020661
 protein coding gene Chr10:6328148-6383368 (-)
SPRET/EiJ ENSMSPG00010006436
 protein coding gene Chr10:6696489-6743453 (-)
WSB/EiJ ENSIUOG00005013399
 protein coding gene Chr10:6425927-6481566 (-)



Homology
more
  • Human Ortholog
    SAMD5, sterile alpha motif domain containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SAMD5, sterile alpha motif domain containing 5
  • Synonyms
    dJ875H10.1
  • Links
    NCBI Gene ID: 389432
    UniProt: Q5TGI4

  • Chr Location
    6q24.3; chr6:147508690-147954680 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    607
  • Tissues
    2
  • cDNA Data
    16
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060487 Ensembl Gene Model | MGI Sequence Detail 150244 C57BL/6J ±  kb
transcript ENSMUST00000100070 Ensembl | MGI Sequence Detail 6818 Not Applicable  
polypeptide ENSMUSP00000097648 Ensembl | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory