9430034N14Rik Gene Detail

Summary

• Symbol
  9430034N14Rik
• Name
  RIKEN cDNA 9430034N14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444791
  NCBI Gene: 320811
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:155901969-155905753 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444791	lncRNA gene	Chr1:155901969-155905753 (-)
129S1/SvImJ	ENSMUSG00200007652	unclassified gene	Chr1:153343901-153347684 (-)
A/J	ENSMUSG00195022981	unclassified gene	Chr1:152730366-152734163 (-)
AKR/J	ENSMUSG00220006331	unclassified gene	Chr1:152529645-152533438 (-)
BALB/cJ	ENSMUSG00180033344	unclassified gene	Chr1:152949539-152953333 (-)
C3H/HeJ	ENSMUSG00175003063	unclassified gene	Chr1:152993942-152997739 (-)
C57BL/6NJ	ENSMUSG00215003959	unclassified gene	Chr1:152888101-152891886 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000478	unclassified gene	Chr1:146740904-146744900 (-)
CAST/EiJ	ENSTCUG00005006259	unclassified gene	Chr1:151543830-151547686 (-)
CBA/J	ENSMUSG00210035397	unclassified gene	Chr1:152892051-152895850 (-)
DBA/2J	ENSMUSG00185047514	unclassified gene	Chr1:157168742-157172540 (-)
FVB/NJ	ENSMUSG00205030272	unclassified gene	Chr1:152024437-152028234 (-)
JF1/MsJ	ENSUMUG00000036034	unclassified gene	Chr1:156320720-156324519 (-)
LP/J	ENSMUSG00230016952	unclassified gene	Chr1:156733854-156737640 (-)
NOD/ShiLtJ	ENSMUSG00190012759	unclassified gene	Chr1:152740185-152743982 (-)
NZO/HlLtJ	ENSMUSG00225006475	unclassified gene	Chr1:160405379-160409163 (-)
PWK/PhJ	ENSLUMG00010031487	unclassified gene	Chr1:151679526-151683318 (-)
SPRET/EiJ	ENSMSPG00010043760	unclassified gene	Chr1:155031832-155035614 (-)
WSB/EiJ	ENSIUOG00005024218	unclassified gene	Chr1:152322412-152326201 (-)

Homology

• Gene Tree
  9430034N14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000102964 (Evidence)
• NCBI Gene
  320811

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102964	Ensembl Gene Model | MGI Sequence Detail	3785	C57BL/6J
transcript	AK050177	GenBank | ENA | DDBJ | MGI Sequence Detail	3786	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9430034N14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14389	Chr1:155905515-155905539 (-)	226 bp