C330018A13Rik Gene Detail

Summary

• Symbol
  C330018A13Rik
• Name
  RIKEN cDNA C330018A13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444781
  NCBI Gene: 320805
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:116261673-116267169 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  305 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444781	lncRNA gene	Chr5:116261609-116268501 (+)
129S1/SvImJ	ENSMUSG00200023768	lncRNA gene	Chr5:110002067-110007599 (+)
A/J	ENSMUSG00195041407	lncRNA gene	Chr5:109524431-109529969 (+)
AKR/J	ENSMUSG00220052027	lncRNA gene	Chr5:109031808-109037343 (+)
BALB/cJ	ENSMUSG00180047969	lncRNA gene	Chr5:109652819-109658357 (+)
C3H/HeJ	ENSMUSG00175048971	lncRNA gene	Chr5:111640550-111646070 (+)
C57BL/6NJ	ENSMUSG00215039571	lncRNA gene	Chr5:109663135-109668657 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003744	antisense lncRNA gene	Chr5:109082095-109087818 (+)
CAST/EiJ	ENSTCUG00005034165	lncRNA gene	Chr5:108845697-108851275 (+)
CBA/J	ENSMUSG00210047617	lncRNA gene	Chr5:110391582-110397106 (+)
DBA/2J	ENSMUSG00185054206	lncRNA gene	Chr5:113451097-113456615 (+)
FVB/NJ	ENSMUSG00205053158	lncRNA gene	Chr5:109293967-109299526 (+)
JF1/MsJ	ENSUMUG00000054249	lncRNA gene	Chr5:116276473-116282045 (+)
LP/J	ENSMUSG00230049295	lncRNA gene	Chr5:117540177-117545712 (+)
NOD/ShiLtJ	ENSMUSG00190049502	lncRNA gene	Chr5:109328973-109334507 (+)
NZO/HlLtJ	ENSMUSG00225016319	lncRNA gene	Chr5:125200500-125206019 (+)
PWK/PhJ	ENSLUMG00010041726	lncRNA gene	Chr5:108171755-108177324 (+)
SPRET/EiJ	ENSMSPG00010045114	lncRNA gene	Chr5:111462467-111467979 (+)
WSB/EiJ	ENSIUOG00005047033	lncRNA gene	Chr5:112032805-112038330 (+)

Homology

• Gene Tree
  C330018A13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving C330018A13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086655 (Evidence)
• NCBI Gene
  320805

Representative Sequences			Length	Strain/Species
genomic	320805	NCBI Gene Model | MGI Sequence Detail	5497	C57BL/6J
transcript	NR_153384	RefSeq | MGI Sequence Detail	1599	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C330018A13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48342	Chr5:116261649-116261696 (+)	0 bp