A130071D04Rik Gene Detail

Summary

• Symbol
  A130071D04Rik
• Name
  RIKEN cDNA A130071D04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444749
  NCBI Gene: 320791
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:138089558-138095421 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444749	lncRNA gene	Chr1:138089558-138095421 (-)
129S1/SvImJ	ENSMUSG00200008367	unclassified gene	Chr1:135721792-135727655 (-)
A/J	ENSMUSG00195016741	unclassified gene	Chr1:134807938-134813807 (-)
AKR/J	ENSMUSG00220003432	unclassified gene	Chr1:134669117-134674980 (-)
BALB/cJ	ENSMUSG00180011384	unclassified gene	Chr1:135318836-135324699 (-)
C3H/HeJ	ENSMUSG00175006781	unclassified gene	Chr1:135025541-135031410 (-)
C57BL/6NJ	ENSMUSG00215020276	unclassified gene	Chr1:135020765-135026628 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000445	unclassified gene	Chr1:129725517-129731533 (-)
CAST/EiJ	ENSTCUG00005013352	unclassified gene	Chr1:133964533-133970440 (-)
CBA/J	ENSMUSG00210014297	unclassified gene	Chr1:134971495-134977364 (-)
DBA/2J	ENSMUSG00185034000	unclassified gene	Chr1:139333220-139339083 (-)
FVB/NJ	ENSMUSG00205002531	unclassified gene	Chr1:134332993-134338853 (-)
JF1/MsJ	ENSUMUG00000052140	unclassified gene	Chr1:138442095-138447938 (-)
LP/J	ENSMUSG00230039561	unclassified gene	Chr1:138853074-138858937 (-)
NOD/ShiLtJ	ENSMUSG00190003028	unclassified gene	Chr1:134973735-134979595 (-)
NZO/HlLtJ	ENSMUSG00225020119	unclassified gene	Chr1:142620272-142626134 (-)
PWK/PhJ	ENSLUMG00010002010	unclassified gene	Chr1:134060241-134066030 (-)
SPRET/EiJ	ENSMSPG00010012552	unclassified gene	Chr1:136907320-136913250 (-)
WSB/EiJ	ENSIUOG00005029969	unclassified gene	Chr1:134758916-134764779 (-)

Homology

• Gene Tree
  A130071D04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000104291 (Evidence)
• NCBI Gene
  320791

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104291	Ensembl Gene Model | MGI Sequence Detail	5864	C57BL/6J
transcript	NR_190156	RefSeq | MGI Sequence Detail	3051	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A130071D04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14016	Chr1:138093004-138093025 (-)	2,406 bp
Tssr14015	Chr1:138092926-138092938 (-)	2,489 bp
Tssr14014	Chr1:138092495-138092504 (-)	2,921 bp
Tssr14013	Chr1:138090282-138090295 (-)	5,132 bp