A630072M18Rik Gene Detail

Summary

• Symbol
  A630072M18Rik
• Name
  RIKEN cDNA A630072M18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444702
  NCBI Gene: 320770
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:21155987-21161396 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 9.83 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  273 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444702	lncRNA gene	Chr5:21155987-21161396 (+)
129S1/SvImJ	ENSMUSG00200012132	lncRNA gene	Chr5:16792700-16798110 (+)
A/J	ENSMUSG00195042117	lncRNA gene	Chr5:16269128-16274538 (+)
AKR/J	ENSMUSG00220039860	lncRNA gene	Chr5:16308882-16314316 (+)
BALB/cJ	ENSMUSG00180026972	lncRNA gene	Chr5:16121078-16126488 (+)
C3H/HeJ	ENSMUSG00175028125	lncRNA gene	Chr5:18077876-18083285 (+)
C57BL/6NJ	ENSMUSG00215024056	lncRNA gene	Chr5:16688626-16694035 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003633	antisense lncRNA gene	Chr5:15963485-15969590 (+)
CAST/EiJ	ENSTCUG00005003634	lncRNA gene	Chr5:16364182-16369087 (+)
CBA/J	ENSMUSG00210005830	lncRNA gene	Chr5:17112054-17117463 (+)
DBA/2J	ENSMUSG00185017944	lncRNA gene	Chr5:18608565-18614001 (+)
FVB/NJ	ENSMUSG00205037117	lncRNA gene	Chr5:15819976-15825385 (+)
JF1/MsJ	ENSUMUG00000006392	lncRNA gene	Chr5:23211103-23215982 (+)
LP/J	ENSMUSG00230026270	lncRNA gene	Chr5:23075063-23080473 (+)
NOD/ShiLtJ	ENSMUSG00190005272	lncRNA gene	Chr5:16136867-16142276 (+)
NZO/HlLtJ	ENSMUSG00225009572	lncRNA gene	Chr5:28470858-28476296 (+)
PWK/PhJ	ENSLUMG00010035521	lncRNA gene	Chr5:16237795-16243239 (+)
SPRET/EiJ	ENSMSPG00010031394	lncRNA gene	Chr5:17123170-17128680 (+)
WSB/EiJ	ENSIUOG00005032028	lncRNA gene	Chr5:18937657-18943067 (+)

Homology

• Gene Tree
  A630072M18Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  2
• Gene trapped
  9
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving A630072M18Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000101013 (Evidence)
• NCBI Gene
  320770

Representative Sequences			Length	Strain/Species
genomic	320770	NCBI Gene Model | MGI Sequence Detail	5410	C57BL/6J
transcript	NR_030699	RefSeq | MGI Sequence Detail	5410	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Diseases 1

  Phenotypes 12
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A630072M18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45282	Chr5:21155769-21155773 (+)	-216 bp
Tssr45283	Chr5:21155928-21155948 (+)	-49 bp
Tssr45284	Chr5:21155954-21155970 (+)	-25 bp
Tssr45285	Chr5:21155981-21155992 (+)	0 bp
Tssr45286	Chr5:21156032-21156043 (+)	51 bp
Tssr45287	Chr5:21156169-21156193 (+)	194 bp
Tssr45288	Chr5:21156958-21156990 (+)	987 bp