A430034D21Rik Gene Detail

Summary

• Symbol
  A430034D21Rik
• Name
  RIKEN cDNA A430034D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444685
  NCBI Gene: 320763
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:136175400-136178214 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444685	lncRNA gene	Chr1:136175400-136178214 (+)
129S1/SvImJ	ENSMUSG00200008882	lncRNA gene	Chr1:133799778-133802582 (+)
A/J	ENSMUSG00195017119	lncRNA gene	Chr1:132862968-132865782 (+)
AKR/J	ENSMUSG00220003696	lncRNA gene	Chr1:132753822-132756636 (+)
BALB/cJ	ENSMUSG00180011541	lncRNA gene	Chr1:133403514-133406328 (+)
C3H/HeJ	ENSMUSG00175006677	lncRNA gene	Chr1:133107000-133109814 (+)
C57BL/6NJ	ENSMUSG00215020838	lncRNA gene	Chr1:133105364-133108177 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004504	lincRNA gene	Chr1:127864425-127867261 (+)
CAST/EiJ	ENSTCUG00005038474	lncRNA gene	Chr1:132039437-132042245 (+)
CBA/J	ENSMUSG00210014518	lncRNA gene	Chr1:133037317-133040131 (+)
DBA/2J	ENSMUSG00185032639	lncRNA gene	Chr1:137414585-137417388 (+)
FVB/NJ	ENSMUSG00205002813	lncRNA gene	Chr1:132373045-132375859 (+)
JF1/MsJ	ENSUMUG00000051505	lncRNA gene	Chr1:136541886-136544704 (+)
LP/J	ENSMUSG00230039589	lncRNA gene	Chr1:136938116-136940929 (+)
NOD/ShiLtJ	ENSMUSG00190003079	lncRNA gene	Chr1:133051331-133054145 (+)
NZO/HlLtJ	ENSMUSG00225020193	lncRNA gene	Chr1:140705097-140707911 (+)
PWK/PhJ	ENSLUMG00010002153	lncRNA gene	Chr1:132165649-132168458 (+)
SPRET/EiJ	ENSMSPG00010012359	lncRNA gene	Chr1:134966340-134969159 (+)
WSB/EiJ	ENSIUOG00005028747	lncRNA gene	Chr1:132821046-132823847 (+)

Homology

• Gene Tree
  A430034D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving A430034D21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000103594 (Evidence)
• NCBI Gene
  320763

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103594	Ensembl Gene Model | MGI Sequence Detail	2815	C57BL/6J
transcript	ENSMUST00000194339	Ensembl | MGI Sequence Detail	1802	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A430034D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9052	Chr1:136175417-136175439 (+)	28 bp