A630052C17Rik Gene Detail

Summary

• Symbol
  A630052C17Rik
• Name
  RIKEN cDNA A630052C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444673
  NCBI Gene: 320757
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:29120811-29123558 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 16.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444673	lncRNA gene	Chr11:29120811-29123558 (-)
129S1/SvImJ	ENSMUSG00200008684	protein coding gene	Chr11:26106245-26156103 (-)
129S1/SvImJ	ENSMUSG00200010663	lncRNA gene	Chr11:26153496-26156145 (-)
A/J	ENSMUSG00195014894	lncRNA gene	Chr11:26057079-26059773 (-)
AKR/J	ENSMUSG00220008659	lncRNA gene	Chr11:26258121-26260771 (-)
BALB/cJ	ENSMUSG00180008036	lncRNA gene	Chr11:26073209-26075859 (-)
C3H/HeJ	ENSMUSG00175017407	lncRNA gene	Chr11:26084762-26087412 (-)
C57BL/6NJ	ENSMUSG00215010815	lncRNA gene	Chr11:26024680-26027329 (-)
C57BL/6NJ	ENSMUSG00215006814	protein coding gene	Chr11:25977426-26027287 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013301	unclassified non-coding RNA gene	Chr11:24821078-24823692 (-)
CAST/EiJ	ENSTCUG00005029126	lncRNA gene	Chr11:25927738-25930388 (-)
CBA/J	ENSMUSG00210009705	protein coding gene	Chr11:25993944-26038554 (-)
CBA/J	ENSMUSG00210010218	lncRNA gene	Chr11:26035947-26038596 (-)
DBA/2J	ENSMUSG00185019764	lncRNA gene	Chr11:26143258-26145952 (-)
FVB/NJ	ENSMUSG00205022374	lncRNA gene	Chr11:26129226-26131876 (-)
JF1/MsJ	ENSUMUG00000012359	lncRNA gene	Chr11:26389086-26391736 (-)
LP/J	ENSMUSG00230015964	lncRNA gene	Chr11:27294418-27297068 (-)
NOD/ShiLtJ	ENSMUSG00190024992	lncRNA gene	Chr11:26265638-26268288 (-)
NZO/HlLtJ	ENSMUSG00225022429	lncRNA gene	Chr11:29228751-29231401 (-)
PWK/PhJ	ENSLUMG00010017456	lncRNA gene	Chr11:26039842-26042536 (-)
SPRET/EiJ	ENSMSPG00010021187	lncRNA gene	Chr11:26350992-26353646 (-)
WSB/EiJ	ENSIUOG00005013761	lncRNA gene	Chr11:26122564-26125214 (-)

Homology

• Gene Tree
  A630052C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving A630052C17Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  601
• Tissues
  3
• cDNA Data
  12
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086725 (Evidence)
• NCBI Gene
  320757

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086725	Ensembl Gene Model | MGI Sequence Detail	2748	C57BL/6J
transcript	ENSMUST00000334767	Ensembl | MGI Sequence Detail	2306	Not Applicable
polypeptide	Q8C9J1	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 3

References

• Summaries
  All 17

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A630052C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107208	Chr11:29122727-29122756 (-)	816 bp