6530403H02Rik Gene Detail

Summary

• Symbol
  6530403H02Rik
• Name
  RIKEN cDNA 6530403H02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444638
  NCBI Gene: 320739
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:120363580-120680733 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7852 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444638	lncRNA gene	Chr3:120247983-120680733 (-)
129S1/SvImJ	ENSMUSG00200027227	lncRNA gene	Chr3:117098084-117366637 (-)
A/J	ENSMUSG00195016746	lncRNA gene	Chr3:117331501-117599464 (-)
AKR/J	ENSMUSG00220026356	lncRNA gene	Chr3:115717902-115985943 (-)
BALB/cJ	ENSMUSG00180031460	lncRNA gene	Chr3:117267750-117535729 (-)
C3H/HeJ	ENSMUSG00175028840	lncRNA gene	Chr3:116812684-117080612 (-)
C57BL/6NJ	ENSMUSG00215007252	lncRNA gene	Chr3:117525268-117813540 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005717	lincRNA gene	Chr3:114168736-114425824 (-)
CAST/EiJ	ENSTCUG00005033585	lncRNA gene	Chr3:117806889-118073470 (-)
CBA/J	ENSMUSG00210003154	lncRNA gene	Chr3:117445984-117713898 (-)
DBA/2J	ENSMUSG00185008350	lncRNA gene	Chr3:118007850-118291258 (-)
FVB/NJ	ENSMUSG00205008041	lncRNA gene	Chr3:116383137-116651104 (-)
JF1/MsJ	ENSUMUG00000004140	lncRNA gene	Chr3:116900683-117164443 (-)
LP/J	ENSMUSG00230012723	lncRNA gene	Chr3:119948710-120217246 (-)
NOD/ShiLtJ	ENSMUSG00190038052	lncRNA gene	Chr3:118391376-118659332 (-)
NZO/HlLtJ	ENSMUSG00225003853	lncRNA gene	Chr3:122435729-122719114 (-)
PWK/PhJ	ENSLUMG00010009834	lncRNA gene	Chr3:116798178-117065730 (-)
SPRET/EiJ	ENSMSPG00010033527	lncRNA gene	Chr3:117516463-117795472 (-)
WSB/EiJ	ENSIUOG00005006991	lncRNA gene	Chr3:117612670-117880475 (-)

Homology

• Gene Tree
  6530403H02Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 6530403H02Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  77
• RefSeq
  1

• Ensembl
  ENSMUSG00000098097 (Evidence)
• NCBI Gene
  320739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098097	Ensembl Gene Model | MGI Sequence Detail	317154	C57BL/6J
transcript	ENSMUST00000182124	Ensembl | MGI Sequence Detail	3191	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 6530403H02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35394	Chr3:120680377-120680395 (-)	347 bp