A230087F16Rik Gene Detail

Summary

• Symbol
  A230087F16Rik
• Name
  RIKEN cDNA A230087F16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444635
  NCBI Gene: 100503323
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:111250863-111259509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 60.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  380 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444635	lncRNA gene	Chr12:111250863-111270262 (+)
129S1/SvImJ	ENSMUSG00200027954	lncRNA gene	Chr12:103029440-103038669 (+)
A/J	ENSMUSG00195050753	lncRNA gene	Chr12:105553743-105562849 (+)
AKR/J	ENSMUSG00220043618	lncRNA gene	Chr12:103448815-103457917 (+)
BALB/cJ	ENSMUSG00180050983	lncRNA gene	Chr12:104792494-104801722 (+)
C3H/HeJ	ENSMUSG00175050664	lncRNA gene	Chr12:107365197-107374363 (+)
C57BL/6NJ	ENSMUSG00215051392	lncRNA gene	Chr12:104065417-104074646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004920	lincRNA gene	Chr12:105740687-105750252 (+)
CAST/EiJ	ENSTCUG00005043435	lncRNA gene	Chr12:103548136-103557324 (+)
CBA/J	ENSMUSG00210031802	lncRNA gene	Chr12:104426650-104435816 (+)
DBA/2J	ENSMUSG00185031104	lncRNA gene	Chr12:106256635-106265737 (+)
FVB/NJ	ENSMUSG00205040667	lncRNA gene	Chr12:103479935-103489163 (+)
JF1/MsJ	ENSUMUG00000026765	lncRNA gene	Chr12:111018157-111027322 (+)
LP/J	ENSMUSG00230044756	lncRNA gene	Chr12:113294023-113303250 (+)
NOD/ShiLtJ	ENSMUSG00190034372	lncRNA gene	Chr12:81742339-81751441 (-)
NZO/HlLtJ	ENSMUSG00225043144	lncRNA gene	Chr12:115042200-115051426 (+)
PWK/PhJ	ENSLUMG00010048548	lncRNA gene	Chr12:104473350-104482534 (+)
SPRET/EiJ	ENSMSPG00010025153	lncRNA gene	Chr12:106755077-106764751 (+)
WSB/EiJ	ENSIUOG00005037176	lncRNA gene	Chr12:103464160-103472482 (+)

Homology

• Gene Tree
  A230087F16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000097381 (Evidence)
• NCBI Gene
  100503323

Representative Sequences			Length	Strain/Species
genomic	100503323	NCBI Gene Model | MGI Sequence Detail	8647	C57BL/6J
transcript	AK039023	GenBank | ENA | DDBJ | MGI Sequence Detail	2099	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573