A530030E21Rik Gene Detail

Summary

• Symbol
  A530030E21Rik
• Name
  RIKEN cDNA A530030E21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444617
  NCBI Gene: 320731
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:19062275-19063584 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444617	lncRNA gene	Chr16:19062275-19063584 (+)
129S1/SvImJ	ENSMUSG00200048729	unclassified gene	Chr16:16059585-16060894 (+)
A/J	ENSMUSG00195035316	unclassified gene	Chr16:15617021-15618330 (+)
AKR/J	ENSMUSG00220046153	unclassified gene	Chr16:15932080-15933393 (+)
BALB/cJ	ENSMUSG00180041715	unclassified gene	Chr16:15858315-15859624 (+)
C3H/HeJ	ENSMUSG00175051157	unclassified gene	Chr16:16002974-16004281 (+)
C57BL/6NJ	ENSMUSG00215042324	unclassified gene	Chr16:15724302-15725613 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046663	unclassified gene	Chr16:16288675-16289945 (+)
CAST/EiJ	ENSTCUG00005045842	unclassified gene	Chr16:16360970-16362290 (+)
CBA/J	ENSMUSG00210047837	unclassified gene	Chr16:16019240-16020549 (+)
DBA/2J	ENSMUSG00185035310	unclassified gene	Chr16:15963911-15965220 (+)
FVB/NJ	ENSMUSG00205047715	unclassified gene	Chr16:15973214-15974523 (+)
JF1/MsJ	ENSUMUG00000054480	unclassified gene	Chr16:16203240-16204540 (+)
LP/J	ENSMUSG00230047544	unclassified gene	Chr16:18543252-18544561 (+)
NOD/ShiLtJ	ENSMUSG00190050894	unclassified gene	Chr16:16105486-16106795 (+)
NZO/HlLtJ	ENSMUSG00225038587	unclassified gene	Chr16:21789084-21790393 (+)
PWK/PhJ	ENSLUMG00010049458	unclassified gene	Chr16:15997798-15999104 (+)
PWK/PhJ	ENSLUMG00010050934	unclassified gene	Chr16:15925587-15926857 (+)
SPRET/EiJ	ENSMSPG00010047366	unclassified gene	Chr16:15887040-15888357 (+)
WSB/EiJ	ENSIUOG00005043436	unclassified gene	Chr16:16094243-16095506 (+)

Homology

• Gene Tree
  A530030E21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000105160 (Evidence)
• NCBI Gene
  320731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105160	Ensembl Gene Model | MGI Sequence Detail	1310	C57BL/6J
transcript	AK080099	GenBank | ENA | DDBJ | MGI Sequence Detail	1310	C57BL/6J

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573