D130058E05Rik Gene Detail

Summary

• Symbol
  D130058E05Rik
• Name
  RIKEN cDNA D130058E05 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2444614
  NCBI Gene: 102637806
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:89857930-89862331 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 45.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444614	lncRNA gene	Chr1:89857903-89874259 (+)
129S1/SvImJ	ENSMUSG00200038314	lncRNA gene	Chr1:87081868-87085839 (+)
A/J	ENSMUSG00195033237	lncRNA gene	Chr1:86642877-86646849 (+)
AKR/J	ENSMUSG00220045643	lncRNA gene	Chr1:86791079-86795050 (+)
BALB/cJ	ENSMUSG00180018057	lncRNA gene	Chr1:86954507-86958481 (+)
C3H/HeJ	ENSMUSG00175001584	lncRNA gene	Chr1:86826520-86830493 (+)
C57BL/6NJ	ENSMUSG00215035567	lncRNA gene	Chr1:86757322-86761295 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013247	unclassified non-coding RNA gene	Chr1:82408246-82411319 (+)
CAST/EiJ	ENSTCUG00005007748	lncRNA gene	Chr1:86403597-86407574 (+)
CBA/J	ENSMUSG00210012359	lncRNA gene	Chr1:86671855-86675827 (+)
DBA/2J	ENSMUSG00185016939	lncRNA gene	Chr1:91133667-91137640 (+)
FVB/NJ	ENSMUSG00205045367	lncRNA gene	Chr1:86073855-86077826 (+)
JF1/MsJ	ENSUMUG00000020040	lncRNA gene	Chr1:89892898-89896884 (+)
LP/J	ENSMUSG00230020940	lncRNA gene	Chr1:90418091-90422062 (+)
NOD/ShiLtJ	ENSMUSG00190036052	lncRNA gene	Chr1:86717099-86721070 (+)
NZO/HlLtJ	ENSMUSG00225004193	lncRNA gene	Chr1:94314236-94318207 (+)
PWK/PhJ	ENSLUMG00010048772	lncRNA gene	Chr1:86291330-86295310 (+)
SPRET/EiJ	ENSMSPG00010047588	lncRNA gene	Chr1:88312412-88316384 (+)
WSB/EiJ	ENSIUOG00005041725	lncRNA gene	Chr1:86386239-86390208 (+)

Homology

• Gene Tree
  D130058E05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving D130058E05Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  2

• Ensembl
  ENSMUSG00000092627 (Evidence)
• NCBI Gene
  102637806

Representative Sequences			Length	Strain/Species
genomic	102637806	NCBI Gene Model | MGI Sequence Detail	4402	C57BL/6J
transcript	AK051578	GenBank | ENA | DDBJ | MGI Sequence Detail	3037	C57BL/6J
polypeptide	XP_030100268	RefSeq | MGI Sequence Detail	235	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for D130058E05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8013	Chr1:89857933-89857971 (+)	22 bp