6030443J06Rik Gene Detail

Summary

• Symbol
  6030443J06Rik
• Name
  RIKEN cDNA 6030443J06 gene
• Synonyms
  1700030G06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2444595
  NCBI Gene: 320719
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:22755411-22763169 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  404 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444595	lncRNA gene	Chr5:22755362-23012848 (+)
129S1/SvImJ	ENSMUSG00200012028	lncRNA gene	Chr5:18365930-18616443 (+)
A/J	ENSMUSG00195040342	lncRNA gene	Chr5:17892302-18145551 (+)
AKR/J	ENSMUSG00220038158	lncRNA gene	Chr5:17917035-18170329 (+)
BALB/cJ	ENSMUSG00180027633	lncRNA gene	Chr5:17723481-17980964 (+)
C3H/HeJ	ENSMUSG00175027999	lncRNA gene	Chr5:19690547-19943787 (+)
C57BL/6NJ	ENSMUSG00215030234	lncRNA gene	Chr5:18303753-18561234 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005989	lincRNA gene	Chr5:17740449-17742923 (+)
CAST/EiJ	ENSTCUG00005003625	lncRNA gene	Chr5:17904888-18151141 (+)
CBA/J	ENSMUSG00210005807	lncRNA gene	Chr5:18730187-18983432 (+)
DBA/2J	ENSMUSG00185039777	lncRNA gene	Chr5:20181533-20446444 (+)
FVB/NJ	ENSMUSG00205033938	lncRNA gene	Chr5:17420174-17677635 (+)
JF1/MsJ	ENSUMUG00000007428	lncRNA gene	Chr5:24755389-25006682 (+)
LP/J	ENSMUSG00230026338	lncRNA gene	Chr5:24648157-24898644 (+)
NOD/ShiLtJ	ENSMUSG00190005315	lncRNA gene	Chr5:17709691-17974616 (+)
NZO/HlLtJ	ENSMUSG00225009606	lncRNA gene	Chr5:30035627-30280774 (+)
PWK/PhJ	ENSLUMG00010038128	lncRNA gene	Chr5:17812249-18055846 (+)
SPRET/EiJ	ENSMSPG00010031934	lncRNA gene	Chr5:18715455-18979737 (+)
WSB/EiJ	ENSIUOG00005033222	lncRNA gene	Chr5:20516270-20766834 (+)

Homology

• Gene Tree
  6030443J06Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  2
• Gene trapped
  6
• Radiation induced
  1
• Spontaneous
  1
• Targeted
  1
• Genomic Mutations
  5 involving 6030443J06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  135
• RefSeq
  1

• Ensembl
  ENSMUSG00000097207 (Evidence)
• NCBI Gene
  320719

Representative Sequences			Length	Strain/Species
genomic	320719	NCBI Gene Model | MGI Sequence Detail	7759	C57BL/6J
transcript	NR_102315	RefSeq | MGI Sequence Detail	4325	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1916757

References

• Summaries
  All 23

  Diseases 1

  Phenotypes 13
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269071 Wong JC, et al., Functional evidence implicating chromosome 7q22 haploinsufficiency in myelodysplastic syndrome pathogenesis. Elife. 2015 Jul 20;4

TSS for 6030443J06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45349	Chr5:22755389-22755440 (+)	4 bp